HsaALTA1061716-5/5 @ hg38
Alternative 3'ss
Gene
ENSG00000261064 | RP11-1000B6.3
Description
NA
Coordinates
chr15:32586023-32587613:+
Coord C1 exon
chr15:32586023-32586118
Coord A exon
chr15:32587226-32587326
Coord C2 exon
chr15:32587327-32587613
Length
101 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTTAACGTCTCATTCTTCAGTCA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GGCTGAAGCAGTGCCTACTCAATAGAACCAGTCATCGTGCAAAGACATGCCACCTGACTCAAAGGCAAAGCCAGAGTGCAGCTTGGAGCAAAGAAG
Seq A exon
TCAGGTTTTCCTTGTTCCTGCGTGTTCAGCCATTTGTTTTTAAGTTTGTGTTGAAGGAGAAACTAACAACGAAAATGGACTTGTTGACGGAAGAAAAGTAG
Seq C2 exon
GAATGCAGCCTCTGGTGCTGTTTGAGTGATCCCTCTGCCCCAGGCCTGGCTGCGCGCTGCTGTGTTCTGGAAAGGCGCATTGTGCCCTCGCTGTGGCAGGTAAGAGTCCTGTACAGGTGCTCTGCCCACTTTACCTTTCAGGCTTCTGTATCAGCTGTTTTTCCCTTGTAGAATGTGCCCCTGACCTGTGCCCCTGACTTCCACCCCTTAACCCTGCCCAATACATCTTTACATGTCTGACCATCAAGACTCTTCTGGGTCATATTCAGTTCATGCTGATATTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000261064-41-20,41-19,41-16,41-15,41-14-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGTGCAAAGACATGCCA
R:
AGGGGCACATTCTACAAGGGA
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains