HsaEX1031811 @ hg38
Exon Skipping
Gene
ENSG00000262728 | RP11-1000B6.8
Description
NA
Coordinates
chr15:32586105-32596689:-
Coord C1 exon
chr15:32596471-32596689
Coord A exon
chr15:32588565-32588699
Coord C2 exon
chr15:32586105-32586260
Length
135 bp
Sequences
Splice sites
3' ss Seq
ACACTGTTGTGCTATTTCAGCTC
3' ss Score
8.04
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGACCCCCAGCCCCTTTCTTCAGGGCCCCAAGGGGAAACTGGAGCCCAGGATTGGCAGCGTGGAATCAGGGGACCCCACCGGACTCTTACCAAAGATTTGATGGTGTTCTTCAGTCGACTGATTTTTACGGACGTTGAATCCAGGACTACTGCTCGTTCTTGGCACGGGCTCTGAGGTGCATGCAGAGAGGAGGAGGTGGAGCAGGAGTGGGGAGAGAG
Seq A exon
CTCACCAAGGAAAAGACAAACTCCTAAAAGCTTCCAGGGAGAAAGTCATGCATAAACAAGTGAAACTCAGGATGGCATGAGGCTTCGCCACCACGACTGGTTAGAAGACAACAGCACAGACTTTGAAATTCTAAG
Seq C2 exon
ATCATCTTTGTAACAAGAAGAAAACCAACCAAATGAAAATGAAATGAATTCTCTCAAAAAGAATTAAGTCAAGACAGGAAGAAGGCTCGCAAAGTAATATAAAATATATCTTATGGTTTATGGAAAATTCTTAATAAAATACCTTCTTTGCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000262728-'7-11,'7-10,8-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCACCGGACTCTTACC
R:
CTTTGCGAGCCTTCTTCCTGT
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains