HsaALTA1062709-1/2 @ hg38
Alternative 3'ss
Gene
NA
Description
NA
Coordinates
chr7:5016049-5048091:+
Coord C1 exon
chr7:5016049-5016223
Coord A exon
NA
Coord C2 exon
chr7:5048033-5048091
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
ACCTGCTTCTCCCCCTCTAGGTC
3' ss Score
13
Exon sequences
Seq C1 exon
TGAGTGAGCCCTCGTGGGATCTGCTTGTTGAAAAGTGTGCAGCACCTCCCGCTTCACTCTCTCTGTCTCTCCTGCTCCACCATGGCCAGACGTGCCTGCTTCCCCTTTGCCTTCTGCATGATTGTCAGTTTCCTGAGGCCTCCCCAGCCATGCTTCCTGTACAGCCTGCAGAACT
Seq A exon
NA
Seq C2 exon
GTCTACCAGCCACAGTCTCTGCACGTTTCCAAGAGCAGCAGAAAATGAACACATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272968-5-24,5-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTCTCCTGCTCCACCAT
R:
TGGAAACGTGCAGAGACTGTG
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains