Special

MmuALTA0014915-1/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000061898 | Rbak
Description
RB-associated KRAB repressor [Source:MGI Symbol;Acc:MGI:1927369]
Coordinates
chr5:143941165-143942454:-
Coord C1 exon
chr5:143942228-143942454
Coord A exon
NA
Coord C2 exon
chr5:143941165-143941221
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
GCGAGCTTTTCCTCCAGCAGGTC
3' ss Score
5.49
Exon sequences
Seq C1 exon
CGCGCTTGCGCTGGGCCACTGCGCCGTGGTGACTTCCTGCAGGTCTGGTGTGTCGAGGCTACCTTCCCTCCCGCAGCCTTTGCGTTCGCTAAGCTGGAGTTGCCGAGCCTGCAGGGCCGAGGCCGGAGCTTCCGGGGCGGCAGCGAACAGACTCGGCTGTGCGGGCTAGGGAGGCCTAGCGAGAGCTCGGCGCGGAGGCTGACAGGGGCAGCGGAGACGCCTGCTCG
Seq A exon
NA
Seq C2 exon
GTCAGTCAGCAGTGTCTACAGTTCCCCCAAGAGGAGCAGAACATGAGCAGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061898-0-2,0-1,0-0-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.250
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000059273





     
                   









    
Main Skipping Isoform:
ENSMUSP00000128731





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000133089
          









    
Other Skipping Isoforms:
ENSMUSP00000128731f5217A
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr7:5048031-5048032 
HsaALTA1062709-1/2
Human
(hg19)
chr7:5087662-5087663 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:39081746-39081747 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTAGGGAGGCCTAGCGAGAG

				
R: 
GCTCCTCTTGGGGGAACTGTA

				
Band lengths: 
99-102

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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