HsaALTA1062773-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000273784 | RP11-78J21.7
Description
NA
Coordinates
chr13:52627438-52629359:+
Coord C1 exon
chr13:52627438-52627578
Coord A exon
chr13:52628896-52629218
Coord C2 exon
chr13:52629219-52629359
Length
323 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
ATTTTTTTATTTTTTTGGAGACA
3' ss Score
-1.18
Exon sequences
Seq C1 exon
AAATGAGCCCCTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGCTCTGTTTTGACAAGCAAACAAGCCAGAACTGCTCAGGCAGCTCCGTAGCATGAGGAAGAGTCAGGGGCACAGAGAGATGGAGAGAGACCTAGTTAG
Seq A exon
ACAAAGTTTCACTCTTGTCTCCTCGGCTGGACTGCAATGGTGCGATTTCGGCTTACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACTGGTGCCTGCCACTGTGCCCAGCTAATTTTGTACTTTTAGTAGAGAGGGGGGTTTCTCCATGTTGGCCTGGCTGGTCTTGAACTCCTGACCTCAGGTCATCCACCCGCCTTGGCCTCCCAAAATGCTGGGATTACAGGTGTGAGCCACCGATCCTGGCTGTAGCTGAGATTTCTAATGCACTTGACCTTTTTATTATTTCAG
Seq C2 exon
TTTCAATAACAAAATATCAGATATGAAAATTGCCAGATGTGCTACAGCTAGAATTAATATAAGGCCAGAGCATCAGATTCAGTTTGACCAAGGCTATGACAATTATCCTGGCCTGGAGAAGACTGCTGATCTTAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000273784-13-4,13-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGAGCCCCTGAGTCCTGA
R:
TTCTAAGATCAGCAGTCTTCTCCA
Band lengths:
278-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains