HsaEX0030274 @ hg38
Exon Skipping
Gene
ENSG00000273784 | RP11-78J21.7
Description
NA
Coordinates
chr13:52627438-52637446:+
Coord C1 exon
chr13:52627438-52627578
Coord A exon
chr13:52632422-52632494
Coord C2 exon
chr13:52637305-52637446
Length
73 bp
Sequences
Splice sites
3' ss Seq
TAAAATGTTCTTTTTTTTAGGAA
3' ss Score
10.98
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AAATGAGCCCCTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGCTCTGTTTTGACAAGCAAACAAGCCAGAACTGCTCAGGCAGCTCCGTAGCATGAGGAAGAGTCAGGGGCACAGAGAGATGGAGAGAGACCTAGTTAG
Seq A exon
GAAAAATATATTCAGGGGGAAGAGATGTAATAGATTTCACATTATGGCAGTTACTAAAGAAGCACGTGAACAG
Seq C2 exon
ACACATCACCTTCACTTTGGGATATGGAATTTGATAAGCAGTTAGCCACAGAATATGAACAACCCCTTGAGAATGAGATTGAAGAACTGATCCAGGGGACAAAAGAGGGGAAACTGAGAGTTCCCAATTAATAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000273784_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGCCAGAACTGCTCAGG
R:
TGTCCCCTGGATCAGTTCTTCA
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development