BtaEX0022962 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015522 | MRPS31
Description
Bos taurus mitochondrial ribosomal protein S31 (MRPS31), mRNA. [Source:RefSeq mRNA;Acc:NM_001076015]
Coordinates
chr12:21863589-21870284:+
Coord C1 exon
chr12:21863589-21863729
Coord A exon
chr12:21866506-21866585
Coord C2 exon
chr12:21870141-21870284
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTTTTCTTTTTCAGTTT
3' ss Score
11.74
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TTTCAGTAACATCATATCAGATATGAAAGTTGCCAGATCCTCCACAGCGAGAGCTAGCACACGACCCGTGCACCAGATTCAGTTTGACGAAGGGGCTGATGATTTTGTTGACCGAGAGGAGACCGCTGATCTGAGAAAACG
Seq A exon
TTTTAGGAAAAATATATTCAAGGGGAAGAGACTTAATATTTTTGAGCTTAAGCCAGTTACTGAAGAGGCACCTGAAACAG
Seq C2 exon
AGGCAGCACCTTCTCTTTGGGATGTAGAATTTGCTAAGCAGTTAGCTGCAGTCACTGAACAGCCCTTTCAGAATGGTTTTGAAGAGATGATCCAGTGGACAAAAGAAGGGAAATTGTGGGAGTTCCCAATTAACAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015522_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=0.179 C2=0.020
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(15.8=100)
A:
PF154331=MRP-S31=FE(9.1=100)
C2:
PF154331=MRP-S31=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATCCTCCACAGCGAGAG
R:
AAAGGGCTGTTCAGTGACTGC
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development