MmuEX6034825 @ mm10
Exon Skipping
Gene
ENSMUSG00000031533 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:MGI Symbol;Acc:MGI:1913153]
Coordinates
chr8:22421310-22427891:+
Coord C1 exon
chr8:22421310-22421450
Coord A exon
chr8:22424347-22424420
Coord C2 exon
chr8:22427748-22427891
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTAAATGTTTTTATCTTAGGAA
3' ss Score
8.51
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CTTCACTCACATAATATCAAATATGAAAATTGCCAAGTCTCCCTCCGGGAGAGCTAGTACAAGGCCACAGCACCAGATTCAGTTTGACGAAGACATGGACAGTTCTCTTAAGCAGGAGAAGCCAACTGATTTCAGAAAAAG
Seq A exon
GAAATATTTATTCAAGGGGAAAAGACTTTCAATTTTTGCTGATAAGGCGTTTGCTGATGAACCACCTGAACCAG
Seq C2 exon
AAGCATCACCTTCTCTCTGGGAGATAGAGTTTGCTAAGCAGTTAGCCTCGGTAGCTGACCAGCCCTTTGAGAATGGATTTGAGGAGATGATACAGTGGACCAAGGAGGGGAAGCTGTGGGAGTTCCCAGTCAACAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031533-'4-7,'4-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=0.269 C2=0.041
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(15.9=100)
A:
PF154331=MRP-S31=FE(10.9=100)
C2:
PF154331=MRP-S31=FE(16.2=100)
Main Skipping Isoform:
ENSMUST00000033934fB13059
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTGCCAAGTCTCCCTCCG
R:
AGCTACCGAGGCTAACTGCTT
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types