GgaEX1037095 @ galGal4
Exon Skipping
Gene
ENSGALG00000017033 | MRPS31
Description
mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
Coordinates
chr1:169834234-169841964:+
Coord C1 exon
chr1:169834234-169834377
Coord A exon
chr1:169838420-169838493
Coord C2 exon
chr1:169841821-169841964
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTTTGTTTATAGAAG
3' ss Score
9.09
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CAACGTTATTTCGGAAATGACAGTTAAGAGGCAATCCCCAGCTCAGAGAGGAGTGAGGATATCCAATCGCATCTCCTTGGAGATGGATGAGGATGGTCAAAGAATCAAGCCTGGAAGACCCTCATCTCACTCTGACTCCGGAAG
Seq A exon
AAGTCTTAAAGCAGGAAAAAGGCTTAATATATTCACTAAGGCTTCTCCAGAAACGGAAAACGCACTGAAAACAG
Seq C2 exon
TATCTTCACCAACAATTTGGGATCTGGAATTTGCAAAGGAGATTGCAGCAGTAACTGAGCAGCCTCCCCGGAATGGTTTTGAGGAGATGATCCAGTGGACAAAAGAAGGAATACTGTGGGAGTTTCCAATTGACAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017033_MULTIEX1-5/9=4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.384 C2=0.129
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(15.6=100)
A:
PF154331=MRP-S31=FE(13.6=100)
C2:
PF154331=MRP-S31=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCCCCAGCTCAGAGAGGA
R:
GAGGCTGCTCAGTTACTGCTG
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]