DreEX6010630 @ danRer10
Exon Skipping
Gene
ENSDARG00000057855 | mrps31
Description
mitochondrial ribosomal protein S31 [Source:ZFIN;Acc:ZDB-GENE-030131-3715]
Coordinates
chr5:23643656-23644724:-
Coord C1 exon
chr5:23644575-23644724
Coord A exon
chr5:23643882-23643952
Coord C2 exon
chr5:23643656-23643793
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGTATTGCTTTGTTTCAAAGGAA
3' ss Score
7.17
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AGACATAATTGCTGATATGAAAGTTGGGAAAAGGCAGATGGGCAGATCAAACAGCAGGCCCAGCAATCAGATCCGCTTTGATGATGACGGACAGGGCTATACAGAAGACAGAAGCATTACCAGTGAACTGATGAATGGAATTCACAGAAG
Seq A exon
GAAGAACTCCTTCACTGGCAAGAGGTTAAACATCTTCTCTCCAGGTATGGAGCAAGAATCGTCAGAAATGG
Seq C2 exon
GCCCGACCCTTTGGGATATTGATTTAGCGAATCAAATTGTTCAGTCGACAAATCAGATGCCTCGTAATGGCTTTGAGGAGATGATGCAGTGGACCAAAGAGGGCAAACTCTGGCAATACCCAATCAACAATGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057855-'4-7,'4-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=0.760 C2=0.362
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(16.8=100)
A:
PF154331=MRP-S31=FE(8.1=100)
C2:
PF154331=MRP-S31=FE(15.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTTTGATGATGACGGACA
R:
CCCTCTTTGGTCCACTGCATC
Band lengths:
181-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]