HsaEX0040200 @ hg19
Exon Skipping
Gene
ENSG00000102738 | MRPS31
Description
mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:16632]
Coordinates
chr13:41323274-41331149:-
Coord C1 exon
chr13:41331009-41331149
Coord A exon
chr13:41328155-41328228
Coord C2 exon
chr13:41323274-41323417
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTTTGGACTTAGGAA
3' ss Score
9.86
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TTTCAGTAACATAATATCAGATATGAAAGTTGCCAGATCTGCTACAGCTAGAGTTCGTTCAAGACCAGAGCTTCGGATTCAGTTTGATGAAGGCTATGACAATTATCCTGGCCAGGAGAAGACGGATGATCTTAAAAAAAG
Seq A exon
GAAAAATATATTCACAGGGAAAAGACTTAATATTTTTGACATGATGGCAGTTACTAAAGAAGCACCTGAAACAG
Seq C2 exon
ACACATCACCTTCACTTTGGGATGTGGAATTTGCTAAGCAGTTAGCCACAGTAAATGAACAACCCCTTCAGAATGGATTTGAAGAGCTGATCCAGTGGACAAAAGAGGGGAAACTATGGGAGTTCCCAATTAACAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102738_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.115 C2=0.010
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(15.9=100)
A:
PF154331=MRP-S31=FE(8.4=100)
C2:
PF154331=MRP-S31=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGAGCTTCGGATTCAGT
R:
TGTCCACTGGATCAGCTCTTCA
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)