HsaEX7007728 @ hg38
Exon Skipping
Gene
ENSG00000217576 | RP11-248G5.8
Description
NA
Coordinates
chr13:52175639-52184114:-
Coord C1 exon
chr13:52183976-52184114
Coord A exon
chr13:52180582-52180654
Coord C2 exon
chr13:52175639-52175776
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTGTCTTAGGAA
3' ss Score
11.37
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AGAGCGAACCATGTGCTGGATTTAGCCAGTCCTGCATTTTTCTATACTTCAAATCAAAACGGGCCATGCTTCACATCTACCCATGATGAATAGGGGTACTTTGATTAAGAATAAATAGAGCTGACTGAATTCTGAACAA
Seq A exon
GAAAAACATATTCAAGGGGAAGAGATGTAATAGTTTTGACGTGACGACAGTTACTAAAGAAGCACCTGAACAG
Seq C2 exon
ACACATCACCTTCACTTTGGGATGTGGAATTTGCTAAATAAGCCACAGAAAATGAACATCCCTTCAGAATGGGTTTGAAGAGCTGATCCAGTGGATTAAAGAGGGGAAACTGGGAGTTTCCAATTAACAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576-'38-36,'38-34,41-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGCTTCACATCTACCC
R:
TGGATCAGCTCTTCAAACCCA
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains