HsaEX0030274 @ hg19
Exon Skipping
Gene
ENSG00000139675 | HNRNPA1L2
Description
heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067]
Coordinates
chr13:53201573-53211581:+
Coord C1 exon
chr13:53201573-53201713
Coord A exon
chr13:53206557-53206629
Coord C2 exon
chr13:53211440-53211581
Length
73 bp
Sequences
Splice sites
3' ss Seq
TAAAATGTTCTTTTTTTTAGGAA
3' ss Score
10.98
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AAATGAGCCCCTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGCTCTGTTTTGACAAGCAAACAAGCCAGAACTGCTCAGGCAGCTCCGTAGCATGAGGAAGAGTCAGGGGCACAGAGAGATGGAGAGAGACCTAGTTAG
Seq A exon
GAAAAATATATTCAGGGGGAAGAGATGTAATAGATTTCACATTATGGCAGTTACTAAAGAAGCACGTGAACAG
Seq C2 exon
ACACATCACCTTCACTTTGGGATATGGAATTTGATAAGCAGTTAGCCACAGAATATGAACAACCCCTTGAGAATGAGATTGAAGAACTGATCCAGGGGACAAAAGAGGGGAAACTGAGAGTTCCCAATTAATAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139675_MULTIEX1-4/4=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGCCAGAACTGCTCAGG
R:
TGTCCCCTGGATCAGTTCTTCA
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)