HsaEX0030272 @ hg19
Exon Skipping
Gene
ENSG00000139675 | HNRNPA1L2
Description
heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067]
Coordinates
chr13:53201573-53206629:+
Coord C1 exon
chr13:53201573-53201713
Coord A exon
chr13:53203354-53203494
Coord C2 exon
chr13:53206557-53206629
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGACCTTTTTATTATTTCAGTTT
3' ss Score
8.92
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
AAATGAGCCCCTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGCTCTGTTTTGACAAGCAAACAAGCCAGAACTGCTCAGGCAGCTCCGTAGCATGAGGAAGAGTCAGGGGCACAGAGAGATGGAGAGAGACCTAGTTAG
Seq A exon
TTTCAATAACAAAATATCAGATATGAAAATTGCCAGATGTGCTACAGCTAGAATTAATATAAGGCCAGAGCATCAGATTCAGTTTGACCAAGGCTATGACAATTATCCTGGCCTGGAGAAGACTGCTGATCTTAGAAACAG
Seq C2 exon
GAAAAATATATTCAGGGGGAAGAGATGTAATAGATTTCACATTATGGCAGTTACTAAAGAAGCACGTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139675_MULTIEX1-2/4=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGAGCCCCTGAGTCCTGA
R:
TCACGTGCTTCTTTAGTAACTGCC
Band lengths:
210-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)