Special

MmuEX0029747 @ mm9

Exon Skipping

Gene
ENSMUSG00000031533 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:MGI Symbol;Acc:MGI:1913153]
Coordinates
chr8:23530199-23534892:+
Coord C1 exon
chr8:23530199-23530357
Coord A exon
chr8:23531782-23531922
Coord C2 exon
chr8:23534819-23534892
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCCTGACCTTGTTATTTCAGCTT
3' ss Score
6.75
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GAATGAGTTCCTGAGTCCTGAGTTGGTGGCTGCAGCGTCGGCTGTTGCAGATTCCCTACCTTTTGACAAGCAGACAACCAAGTCAGAGCTGCTCAGGCAGCTGCAGCAACACGAGGAGGAGTTGAGGGCTCAGAAGGACAGAGAGAAGCGCAGGATCAG
Seq A exon
CTTCACTCACATAATATCAAATATGAAAATTGCCAAGTCTCCCTCCGGGAGAGCTAGTACAAGGCCACAGCACCAGATTCAGTTTGACGAAGACATGGACAGTTCTCTTAAGCAGGAGAAGCCAACTGATTTCAGAAAAAG
Seq C2 exon
GAAATATTTATTCAAGGGGAAAAGACTTTCAATTTTTGCTGATAAGGCGTTTGCTGATGAACCACCTGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031533-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.685 A=0.646 C2=0.269
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF154331=MRP-S31=FE(17.9=100)

							
A:
PF154331=MRP-S31=FE(15.9=100)

							
C2:
PF154331=MRP-S31=FE(8.4=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000033934





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr13:52758409-52758549 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr12:21863589-21863729 
Chicken
(galGal4)
chr1:169834234-169834377 
HIGH PSI
GgaEX1037094
(MRPS31)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGTTCCTGAGTCCTGAGTTGGT

				
R: 
GGTTCAGGTGGTTCATCAGCA

				
Band lengths: 
226-367

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"