GgaEX1037094 @ galGal4
Exon Skipping
Gene
ENSGALG00000017033 | MRPS31
Description
mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
Coordinates
chr1:169828948-169838493:+
Coord C1 exon
chr1:169828948-169829106
Coord A exon
chr1:169834234-169834377
Coord C2 exon
chr1:169838420-169838493
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATTTACATTTTTATTTTCAGCAA
3' ss Score
8.24
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AAGCAAGCCTTTAAATCCAGAACTGGTGCAGGCTGCATCTGCCGTTGCATCTTCCTTCCCACACAACAAGGAACAAGCAGAATCAGAATTACTTGCACAACTTAGAAGACATGAAGAAACCACAGATAAACAGAGAAGGGGAGGAACTATTAACATACG
Seq A exon
CAACGTTATTTCGGAAATGACAGTTAAGAGGCAATCCCCAGCTCAGAGAGGAGTGAGGATATCCAATCGCATCTCCTTGGAGATGGATGAGGATGGTCAAAGAATCAAGCCTGGAAGACCCTCATCTCACTCTGACTCCGGAAG
Seq C2 exon
AAGTCTTAAAGCAGGAAAAAGGCTTAATATATTCACTAAGGCTTCTCCAGAAACGGAAAACGCACTGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017033_MULTIEX1-4/9=C1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=1.000 C2=0.384
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(17.2=100)
A:
PF154331=MRP-S31=FE(15.6=100)
C2:
PF154331=MRP-S31=FE(13.6=100)
Main Skipping Isoform:
ENSGALT00000027520fB9555
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAGCCTTTAAATCCAGAACTG
R:
CAGTGCGTTTTCCGTTTCTGG
Band lengths:
226-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]