RnoEX0055870 @ rn6
Exon Skipping
Gene
ENSRNOG00000011839 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:RGD Symbol;Acc:1307668]
Coordinates
chr16:74481199-74485006:-
Coord C1 exon
chr16:74484848-74485006
Coord A exon
chr16:74483780-74483920
Coord C2 exon
chr16:74481199-74481272
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCCTCACCTTGTTATTTCAGCTT
3' ss Score
7.19
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
AAATGAGTTCCTGAGTCCTGAGTTGGTGGCAGCGGCATCTGCTGTTGCGGATTCTCTGCCTTTCGACAAGCAGACGACCAAGTCAGAGCTGCTCAAGCAGCTGCAGCAACACGAGGAAGAGTCAAGGGCTCAGACAGACAGACAGAAGCGCAGGGTTAG
Seq A exon
CTTCACTCAAATAATATCGAATATGAAAATTGCCAAATCCCCTTCGATGAGAGTTAGTTCAAGACCACAGCACCAGATTCAGTTTGACGAAGAAGTGGACAGTTCGCTTAGCCAGGAGAAGCCAGCTGATTTCAGAAGGAG
Seq C2 exon
GAAATGTTTGTTCAAGGGGAAAAGACTTTCGATTTTTGATGTTAAGGCGTTTGACGACGAAGCACCTGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011839-'13-6,'13-4,15-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=0.562 C2=0.000
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(17.9=100)
A:
PF154331=MRP-S31=FE(15.9=100)
C2:
PF154331=MRP-S31=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCTGAGTCCTGAGTTGG
R:
GTTCAGGTGCTTCGTCGTCAA
Band lengths:
226-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]