MmuEX0029747 @ mm10
Exon Skipping
Gene
ENSMUSG00000031533 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:MGI Symbol;Acc:MGI:1913153]
Coordinates
chr8:22419727-22424420:+
Coord C1 exon
chr8:22419727-22419885
Coord A exon
chr8:22421310-22421450
Coord C2 exon
chr8:22424347-22424420
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCCTGACCTTGTTATTTCAGCTT
3' ss Score
6.75
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GAATGAGTTCCTGAGTCCTGAGTTGGTGGCTGCAGCGTCGGCTGTTGCAGATTCCCTACCTTTTGACAAGCAGACAACCAAGTCAGAGCTGCTCAGGCAGCTGCAGCAACACGAGGAGGAGTTGAGGGCTCAGAAGGACAGAGAGAAGCGCAGGATCAG
Seq A exon
CTTCACTCACATAATATCAAATATGAAAATTGCCAAGTCTCCCTCCGGGAGAGCTAGTACAAGGCCACAGCACCAGATTCAGTTTGACGAAGACATGGACAGTTCTCTTAAGCAGGAGAAGCCAACTGATTTCAGAAAAAG
Seq C2 exon
GAAATATTTATTCAAGGGGAAAAGACTTTCAATTTTTGCTGATAAGGCGTTTGCTGATGAACCACCTGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031533-'3-6,'3-4,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=0.823 C2=0.269
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(17.9=100)
A:
PF154331=MRP-S31=FE(15.9=100)
C2:
PF154331=MRP-S31=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCTGAGTCCTGAGTTGGT
R:
GGTTCAGGTGGTTCATCAGCA
Band lengths:
226-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types