DreEX0047475 @ danRer10
Exon Skipping
Gene
ENSDARG00000057855 | mrps31
Description
mitochondrial ribosomal protein S31 [Source:ZFIN;Acc:ZDB-GENE-030131-3715]
Coordinates
chr5:23643882-23646816:-
Coord C1 exon
chr5:23646667-23646816
Coord A exon
chr5:23644575-23644724
Coord C2 exon
chr5:23643882-23643952
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATCTCAATCTTTACTTTCAGAGA
3' ss Score
9.13
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CGAGACCTTGAATCCAGCGCTGGTTGCTGCAGCTTCTGCAGCTGCGTCCACGTTGCCAAACAGCCAACAGGTGGAGTCAGAGCTCCTCCAGCAGCTGAGGAAACATGAAGCAGAACCGGACGCTCAGAGAGCCGACAGACAGAACATAGG
Seq A exon
AGACATAATTGCTGATATGAAAGTTGGGAAAAGGCAGATGGGCAGATCAAACAGCAGGCCCAGCAATCAGATCCGCTTTGATGATGACGGACAGGGCTATACAGAAGACAGAAGCATTACCAGTGAACTGATGAATGGAATTCACAGAAG
Seq C2 exon
GAAGAACTCCTTCACTGGCAAGAGGTTAAACATCTTCTCTCCAGGTATGGAGCAAGAATCGTCAGAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057855-'2-5,'2-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.980 C2=0.760
Domain overlap (PFAM):
C1:
PF0087314=ACR_tran=FE(25.6=100),PF154331=MRP-S31=FE(41.3=100)
A:
PF154331=MRP-S31=FE(16.8=100)
C2:
PF154331=MRP-S31=FE(8.1=100)
Main Skipping Isoform:
ENSDART00000080609fB3956
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCTTGAATCCAGCGCTG
R:
CCATTTCTGACGATTCTTGCTCC
Band lengths:
220-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]