HsaEX6040072 @ hg38
Exon Skipping
Gene
ENSG00000102738 | MRPS31
Description
mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
Coordinates
chr13:40754019-40759106:-
Coord C1 exon
chr13:40758948-40759106
Coord A exon
chr13:40756873-40757013
Coord C2 exon
chr13:40754019-40754092
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGACCTTTTTATTATTTCAGTTT
3' ss Score
8.92
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
AATTGAGCCCCTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGTGGCAGATTCTCTCCCTTTTGATAAGCAAACAACCAAGTCAGAGCTGCTGAGCCAGCTCCAGCAGCATGAGGAAGAGTCAAGGGCACAGAGAGATGCAAAGCGACCTAAAATTAG
Seq A exon
TTTCAGTAACATAATATCAGATATGAAAGTTGCCAGATCTGCTACAGCTAGAGTTCGTTCAAGACCAGAGCTTCGGATTCAGTTTGATGAAGGCTATGACAATTATCCTGGCCAGGAGAAGACGGATGATCTTAAAAAAAG
Seq C2 exon
GAAAAATATATTCACAGGGAAAAGACTTAATATTTTTGACATGATGGCAGTTACTAAAGAAGCACCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102738_MULTIEX1-3/7=2-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=0.368 C2=0.167
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(17.9=100)
A:
PF154331=MRP-S31=FE(15.9=100)
C2:
PF154331=MRP-S31=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGAGCCCCTGAGTCCTGA
R:
CAGGTGCTTCTTTAGTAACTGCCA
Band lengths:
227-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains