HsaEX6040072 @ hg19
Exon Skipping
Gene
ENSG00000102738 | MRPS31
Description
mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:16632]
Coordinates
chr13:41328155-41333242:-
Coord C1 exon
chr13:41333084-41333242
Coord A exon
chr13:41331009-41331149
Coord C2 exon
chr13:41328155-41328228
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGACCTTTTTATTATTTCAGTTT
3' ss Score
8.92
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
AATTGAGCCCCTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGTGGCAGATTCTCTCCCTTTTGATAAGCAAACAACCAAGTCAGAGCTGCTGAGCCAGCTCCAGCAGCATGAGGAAGAGTCAAGGGCACAGAGAGATGCAAAGCGACCTAAAATTAG
Seq A exon
TTTCAGTAACATAATATCAGATATGAAAGTTGCCAGATCTGCTACAGCTAGAGTTCGTTCAAGACCAGAGCTTCGGATTCAGTTTGATGAAGGCTATGACAATTATCCTGGCCAGGAGAAGACGGATGATCTTAAAAAAAG
Seq C2 exon
GAAAAATATATTCACAGGGAAAAGACTTAATATTTTTGACATGATGGCAGTTACTAAAGAAGCACCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102738-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=0.333 C2=0.115
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(17.9=100)
A:
PF154331=MRP-S31=FE(15.9=100)
C2:
PF154331=MRP-S31=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGAGCCCCTGAGTCCTGA
R:
CAGGTGCTTCTTTAGTAACTGCCA
Band lengths:
227-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)