HsaEX0030273 @ hg19
Exon Skipping
Gene
ENSG00000139675 | HNRNPA1L2
Description
heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067]
Coordinates
chr13:53201573-53206629:+
Coord C1 exon
chr13:53201573-53201713
Coord A exon
chr13:53203904-53204009
Coord C2 exon
chr13:53206557-53206629
Length
106 bp
Sequences
Splice sites
3' ss Seq
TATCTTTTGTTACACCTTAGAGA
3' ss Score
6.72
5' ss Seq
GAGGTCGGG
5' ss Score
1.63
Exon sequences
Seq C1 exon
AAATGAGCCCCTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGCTCTGTTTTGACAAGCAAACAAGCCAGAACTGCTCAGGCAGCTCCGTAGCATGAGGAAGAGTCAGGGGCACAGAGAGATGGAGAGAGACCTAGTTAG
Seq A exon
AGAAATGACCCACCATCAACGAAAAGAAAGAAAGGCGTAGGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCAATTTAGAGGGCCGAGGCAGGCGGATCACGAG
Seq C2 exon
GAAAAATATATTCAGGGGGAAGAGATGTAATAGATTTCACATTATGGCAGTTACTAAAGAAGCACGTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139675_MULTIEX1-3/4=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGAGCCCCTGAGTCCTGA
R:
TCACGTGCTTCTTTAGTAACTGCC
Band lengths:
210-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)