HsaALTA1062776-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000273784 | RP11-78J21.7
Description
NA
Coordinates
chr13:52637305-52642506:+
Coord C1 exon
chr13:52637305-52637446
Coord A exon
chr13:52642369-52642405
Coord C2 exon
chr13:52642406-52642506
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AATGTATTTATTTCCCAAAGAGA
3' ss Score
3.95
Exon sequences
Seq C1 exon
ACACATCACCTTCACTTTGGGATATGGAATTTGATAAGCAGTTAGCCACAGAATATGAACAACCCCTTGAGAATGAGATTGAAGAACTGATCCAGGGGACAAAAGAGGGGAAACTGAGAGTTCCCAATTAATAATGAAGCAG
Seq A exon
AGAATCAGCCAGAATCTCATCCAAATACTCTATCCAG
Seq C2 exon
CTTCATATCTAAGATCTCTGGTGGACTTTTTCTGCCCGTGGACGCCGCTGAAGAAGCATCGTTAAAGTCTCTCTTCACCTTGCCGTCATGTCTAAGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000273784-19-19,19-18,19-17,19-16-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGAAACTGAGAGTTCCCA
R:
TGACGGCAAGGTGAAGAGAGA
Band lengths:
125-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains