HsaALTA1064316-2/5 @ hg38
Alternative 3'ss
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:HGNC:30899]
Coordinates
chr7:99561888-99562398:+
Coord C1 exon
chr7:99561888-99561973
Coord A exon
chr7:99562368-99562385
Coord C2 exon
chr7:99562386-99562398
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCAGGATGTGTTATTTCAGGAG
3' ss Score
3.35
Exon sequences
Seq C1 exon
CTCCACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCCCAGGAGACCAGGCAGCTGCGCTCTTGACAGCCAGGTACCAG
Seq A exon
GAGTTTGTGACATTCGAG
Seq C2 exon
GATGTGGCTGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-8-16,8-15,8-14,8-13,8-11-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.066
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains