MmuALTA1003190-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000007812 | Zfp655
Description
zinc finger protein 655 [Source:MGI Symbol;Acc:MGI:1919861]
Coordinates
chr5:145235306-145235863:+
Coord C1 exon
chr5:145235306-145235391
Coord A exon
chr5:145235737-145235754
Coord C2 exon
chr5:145235755-145235863
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCCAGAATTATTATTTCAGGAG
3' ss Score
1.97
Exon sequences
Seq C1 exon
CTCCACCTGTTCCCCAGGTGCCTGCTCTTCCCCATGAGGGAAGCCCAGGAGACCAGGCAGCTGCGCTCCTGACAGCCAGGTACCAG
Seq A exon
GAGTTTGTGACATTCGAG
Seq C2 exon
GATGTGGCTGTGCATCTTACACGAGAGGAGTGGGGATGCCTGGACCCTGTTCAGAGGGAGCTCTACAGAGAAGTGATGTTAGAGAATTATGGAAACGTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007812-8-8,8-7,8-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGCTCTTCCCCATGAG
R:
CATCCCCACTCCTCTCGTGTA
Band lengths:
106-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types