HsaALTA1064441-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000244187 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:HGNC:28211]
Coordinates
chr9:136791355-136792030:+
Coord C1 exon
chr9:136791355-136791424
Coord A exon
NA
Coord C2 exon
chr9:136791947-136792030
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GGGACCTCGGCTCTTTGCAGGCA
3' ss Score
5.33
Exon sequences
Seq C1 exon
CCGAGCCCTGCCAACCATGGTGAACTTGGGTCTGTCCCGGGTGGACGACGCCGTGGCTGCCAAGCACCCG
Seq A exon
NA
Seq C2 exon
GCACCGGCATGGCCTTTGGCTTGCAGATGTTCATTCAGAGGAAGTTTCCATACCCTTTGCAGTGGAGCCTCCTAGTGGCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000244187-0-3,0-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(16.7=88.9)
A:
NA
C2:
PF151101=TMEM141=FE(29.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCCTGCCAACCATG
R:
CACTAGGAGGCTCCACTGCAA
Band lengths:
146-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains