HsaALTD0000018-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69149033-69150062:-
Coord C1 exon
chr17:69149988-69150062
Coord A exon
NA
Coord C2 exon
chr17:69149033-69149088
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCGAGT
5' ss Score
2.28
3' ss Seq
GTCAGTCTCTTTACATGCAGTGA
3' ss Score
4.69
Exon sequences
Seq C1 exon
TATTCCTCTTTAATGGCGTATAAGTTACCTGTGGAGGATGTCCACCCTCTATCTCGGGCCTTTTTCAAGTTAGAG
Seq A exon
NA
Seq C2 exon
TGAAACAGACCTTCAACCTGGAGGAATACAGCCTCTCTCAGGCTACCTTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263-57-71,58-71,59-71-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCACCCTCTATCTCGGG
R:
GCTCCAAGGTAGCCTGAGAGA
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains