HsaALTD0000156-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133455285-133456215:+
Coord C1 exon
chr9:133455285-133455435
Coord A exon
chr9:133455436-133455603
Coord C2 exon
chr9:133456069-133456215
Length
168 bp
Sequences
Splice sites
5' ss Seq
CCAGTTATG
5' ss Score
-14.22
3' ss Seq
GTCTCCTGCTCCCTTTTCAGGTG
3' ss Score
13.3
Exon sequences
Seq C1 exon
TGCTCTGTTTCCTGTGGGGATGGCATCCAGCGCCGGCGTGACACCTGCCTCGGACCCCAGGCCCAGGCGCCTGTGCCAGCTGATTTCTGCCAGCACTTGCCCAAGCCGGTGACTGTGCGTGGCTGCTGGGCTGGGCCCTGTGTGGGACAGG
Seq A exon
GTACGCCCAGCCTGGTGCCCCACGAAGAAGCCGCTGCTCCAGGACGGACCACAGCCACCCCTGCTGGTGCCTCCCTGGAGTGGTCCCAGGCCCGGGGCCTGCTCTTCTCCCCGGCTCCCCAGCCTCGGCGGCTCCTGCCCGGGCCCCAGGAAAACTCAGTGCAGTCCA
Seq C2 exon
GTGCCTGTGGCAGGCAGCACCTTGAGCCAACAGGAACCATTGACATGCGAGGCCCAGGGCAGGCAGACTGTGCAGTGGCCATTGGGCGGCCCCTCGGGGAGGTGGTGACCCTCCGCGTCCTTGAGAGTTCTCTCAACTGCAGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323-42-42,43-42,44-42-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(83.7=80.4)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCTGTGGGGATGGCATC
R:
GAGGGTCACCACCTCCCC
Band lengths:
258-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains