HsaINT1002771 @ hg38
Intron Retention
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133455285-133456215:+
Coord C1 exon
chr9:133455285-133455603
Coord A exon
chr9:133455604-133456068
Coord C2 exon
chr9:133456069-133456215
Length
465 bp
Sequences
Splice sites
5' ss Seq
CCAGTTATG
5' ss Score
-14.22
3' ss Seq
GTCTCCTGCTCCCTTTTCAGGTG
3' ss Score
13.3
Exon sequences
Seq C1 exon
TGCTCTGTTTCCTGTGGGGATGGCATCCAGCGCCGGCGTGACACCTGCCTCGGACCCCAGGCCCAGGCGCCTGTGCCAGCTGATTTCTGCCAGCACTTGCCCAAGCCGGTGACTGTGCGTGGCTGCTGGGCTGGGCCCTGTGTGGGACAGGGTACGCCCAGCCTGGTGCCCCACGAAGAAGCCGCTGCTCCAGGACGGACCACAGCCACCCCTGCTGGTGCCTCCCTGGAGTGGTCCCAGGCCCGGGGCCTGCTCTTCTCCCCGGCTCCCCAGCCTCGGCGGCTCCTGCCCGGGCCCCAGGAAAACTCAGTGCAGTCCA
Seq A exon
GTTATGTCCTGTCCTCCTTCCTGTCAGGCAGCTGCTGCAGGAGGGGTGGGCAAAGGCATCTTCCTCTGGGAAGGACTGGCACAAGCACTTGGTCCCTGGGTTGTGTGCCTGGGAGGCCGGGATCAGGGCTGGCCCTCTTTCTCCCTGGCAAAGCAAAACCTCCCTTTTACTACTATCAAGGGGAAGTAACTTGAAGGTAGGAACCCAGCTTGTGAGCCCCCTAGCCTCTGGGCTGCTCTGCATGTGCCCCCTCTTGCTGGATCATCTGGTAGCAGCCCTGTGCCCTGAGGGTGATGCTCTGACCTATGCAGCCCCCCTCCCTGTCCTGAGAAGGCTTCCAGCTGGGCCTTGGAGGACAGGGTCCACCCCTACCTCCTGGTCTCCTTCCTCAGCTTGGAAGCCCCGGAGCCTGCCCTGCTGGGAATCGGGGAAGCACTGCTTACCTGTCTCCTGCTCCCTTTTCAG
Seq C2 exon
GTGCCTGTGGCAGGCAGCACCTTGAGCCAACAGGAACCATTGACATGCGAGGCCCAGGGCAGGCAGACTGTGCAGTGGCCATTGGGCGGCCCCTCGGGGAGGTGGTGACCCTCCGCGTCCTTGAGAGTTCTCTCAACTGCAGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323:ENST00000371929:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.291 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(83.7=80.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGTTTCCTGTGGGGATG
R:
GGTTCCTGTTGGCTCAAGGTG
Band lengths:
356-821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains