RnoINT0013311 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5554305-5555421:+
Coord C1 exon
chr3:5554305-5554617
Coord A exon
chr3:5554618-5555274
Coord C2 exon
chr3:5555275-5555421
Length
657 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGG
5' ss Score
3.35
3' ss Seq
ACTCCTTTCCTCTCCGGTAGGAG
3' ss Score
9.09
Exon sequences
Seq C1 exon
TGCTCCGTCTCCTGTGGGGATGGCATCCAGCGCCGGCATGGCACCTGCCTCGGACCCCAGGCTCAAGTGCCTGTGCCAGCCAACTTCTGCCAGCACCTGCCCAAGCCAGTGACTGTGAGAGGCTGCTGGGCTGGACCCTGTGCAGGGCAGAAGATCTCCAGCTCGCTGCCTCACAAGGAAGCTACTCTTCCCAGCCAGACCCTGGCTGCGGTTACTGCTGCCTCTCTGCAATGGTCCCAGCCCCAAGCCCAGGCCCACAGCCTTTTCCCAGACTCCCAGTCTCTGGGGCTCCAGGAAACCCTGGAAGAGCCTG
Seq A exon
GTTAGGTTTCTTCCTGTTTCCTGTTGGGGATCTCACAGCATAAGCCCTCAGGCACTAGACCGTGCTCTGTTGGCCTCAGGGTCTCCTTCCCAGTGGCAAAGGGAAGCCACACTCTTTATGTATGTGTGTGTATGTTCATGTTTGTGTGTGCGTGTGTAGGCCAGAGGACAACCTTGGGTGTCATTTCTCAGACGTTGACTATCTTGTTTTAGACAGGGTCTTTCACTGGCTTGGAGCAAGTAGGTTAGGCTGGCTGGTTGAGCCCAGGGATCCACCTGTCTCTGCCTCCTCAGTGCTGGGACGACAAATGTGAACATCCAGACCTGCCCTTTAAACTGTAGGTTCTGGGGACTGAACTCAGGTCCCCCATGCTTACAACAAAGCACTTTACTGACTGAGCCATCTCTCCAGCTCAGAAATCATACGTTTACTCCTGTCCCCGTCAAATAACCTGAAGGTTGTAGGGTCAGGAGCTCAGGTCCATGCTGTCTGAAGCCCACACACCACACCACCTTCCTTTCCCTGAAGCACAAAGAAGTGGCCTAGTGCTTGGATGGTGACTACTGTTGTGACACATAGCCCCCTTCTCAGCCCCTGCCAGCTCCAGGTTCCAGCCCTGCTCTGTTCTGGTCACCTCACTCCTTTCCTCTCCGGTAG
Seq C2 exon
GAGCCTGTGGAAGGCAATACCTGGAGCCCACAGGAACCATTGACATGCGAGGTCAAGGACAGCTAGACTGTGTGGTAGCCATCGGGAGACCTCTAGGTGAAGTGGTGACCCTCCAAATCCTCGAGAGCTCCCTCAAGTGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.0=32.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCAGTGACTGTGAGAGG
R:
CTTGAGGGAGCTCTCGAGGAT
Band lengths:
349-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]