MmuINT1003802 @ mm10
Intron Retention
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:27005166-27006323:+
Coord C1 exon
chr2:27005166-27005478
Coord A exon
chr2:27005479-27006176
Coord C2 exon
chr2:27006177-27006323
Length
698 bp
Sequences
Splice sites
5' ss Seq
ATGGTTAGG
5' ss Score
3.39
3' ss Seq
ACCCCTTTCCTCCTCTGTAGGTG
3' ss Score
12.89
Exon sequences
Seq C1 exon
TGCTCTGTCTCCTGTGGGGACGGTATTCAGCGCCGGCATGACACCTGCCTTGGACCCCAGGCCCAAGTGCCTGTGCCAGCCAATTTCTGCCAGCACCTGCCCAAGCCAATGACCGTGAGAGGCTGCTGGGCTGGACCCTGTGCAGGGCAGGAGACCTCCAGCTCACTGCCTCACAAGGAAGCTACTCTTCCCAGTCAGACCCAGGCTGCTGCTACTGTTGCTTCTCTGCAGTGGTCCCAGCCCCGAGCCCGGACCCCCACCCTTTTCTCAGCCTCCCAGTCTCTGGGGCTCCAGGAAAACCTGGAAGAGCATG
Seq A exon
GTTAGGTTTCTTCCTGTTTCCTGTTGGGGAAGTGGGCATCTCATAGGATAAGCACTCTGGTGCTAGACCATGTATTGCTGGGCTCAGGGCCTCCTTCCCACCTGGCAAAGGGAAGCCACACTTTTTACATGTGTATGTGTACATGTTCATGTTTGTGTGTATGCAGGTGCAGGTGTGTGTGTGCATGTGCATATGTAGACCAGAGAACAACCTTGGGTATCATTTTTCAAGAATTATCTATCTTGTTTTGGACAGTGTCTTTCATTGGCCCGGAGCTTGCCCAAGGCTGGCTGGTTGAGCCCGGGGACCCACCTATCTCTGCCTCCTCAGTGCTGGGACTACAAGTGTGAACATCCAAATCTGCCCTTTAAAGTATAGGTTCTGGGGGTTGAACTCAGGTCCCCAAGCTTACAAGAAAGCACTTTACTGACCGAGCCATCTCTCCAGCTCAGAAGCCACACTTTTACTTCTGTCCCCATCAAATAATCTGAAGCTTGTAGGGTCAGGGGCTCAGGTCCATGCAATCCAAAGCCTACACACCATACAGCCTCCCTTTCCCTGAAACACACAGAAGTGGCCTAGTGTCTTGGCTGGTGACTATTGCTGTGACATACAGCCCCCTTCTCAGGCCCTGCCAGCTCCAGTTTCCAGGCCTACTTACTCTGTTCTGGCCACCTCACCCCTTTCCTCCTCTGTAG
Seq C2 exon
GTGCCTGTGGAAGGCAGTACCTGGAGCCCACAGGAACCATTCACATGCGAGATCAAGGACGGCTAGACTGTGTGGTGGCCATTGGGAGACCTCTAGGTGAAGTGGTGACCCTACAAATCCTTGAGAGCTCCCTCAAGTGTAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852:ENSMUST00000102891:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(79.5=29.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGTGGGGACGGTATTC
R:
ATGTGAATGGTTCCTGTGGGC
Band lengths:
352-1050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types