GgaINT0124812 @ galGal3
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
NA
Coordinates
chr17:7590345-7591147:+
Coord C1 exon
chr17:7590345-7590657
Coord A exon
chr17:7590658-7591000
Coord C2 exon
chr17:7591001-7591147
Length
343 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CATCTGTCTCTGTTGCACAGGTG
3' ss Score
8.78
Exon sequences
Seq C1 exon
TGTTCAACTTCATGTGGGAATGGTGTTCAGACACGGCACAATTTCTGCCTCAACCGGCTCACTCATAAGCACGTGAACCCCATCTTCTGCAGGCGCTTCCCCAAAGCCATTGTGCTGCGTGGCTGCTCTGCAGGGCCCTGTCCTGAGCAGGGGGTGGACTCCAGGTTGCATGGAGCAGAACTGCAGACAGTGACACCAGCCATGCATCTGATGACTACTGCAGATGCTGAAGGGCCAAGATACAAAGGCCTGATTCTTCCTTCATCTGCTCTGCCAGCTGTCCTTCAGGAACAGATAAAGGAGACCAGGGAAG
Seq A exon
GTGAGGAGAAAACTACCAAAGGGTACAGATGGGTACTAATTGTGTGTGATGGGGTTCCAGTGACTCTATGGGCATACAGAGACAGGAGCACAGAAGGGAATGCTCATGCTTAGAGGGGACAGCATGCCGTGAGCTCACCCTGCTGTCTAAGCCAGGAACAATGACTGCCTTCCATTGGCTTCCCAAGGCTCTTCTGACTTGGGACTCTTTGGGCAGCAGACTCCTCCTGTACTTTACCCAGAAGATGGACACACTTGGTGCTCGTCTGTTCATGGTGCCATGAGAGGAATGAATGCAGTGTTTTAACAGCTGGATGTGTTTCTCATCTGTCTCTGTTGCACAG
Seq C2 exon
GTGTCTGTGGAAAGCTCTTTCTTAATACCAGTGGGGTCATCAACATGACAGGTGTAGAGACCAGTGACTGCACTGTTGCTATTGGACGTCCTCTAGGAGAGGAGATCACAATCAATGTTCTGGAGAGCTCCCTCAACTGCAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATTTCTGCCTCAACCG
R:
GCAGTCACTGGTCTCTACACC
Band lengths:
349-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]