MmuINT0011186 @ mm9
Intron Retention
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26860686-26861843:+
Coord C1 exon
chr2:26860686-26860998
Coord A exon
chr2:26860999-26861696
Coord C2 exon
chr2:26861697-26861843
Length
698 bp
Sequences
Splice sites
5' ss Seq
ATGGTTAGG
5' ss Score
3.39
3' ss Seq
ACCCCTTTCCTCCTCTGTAGGTG
3' ss Score
12.89
Exon sequences
Seq C1 exon
TGCTCTGTCTCCTGTGGGGACGGTATTCAGCGCCGGCATGACACCTGCCTTGGACCCCAGGCCCAAGTGCCTGTGCCAGCCAATTTCTGCCAGCACCTGCCCAAGCCAATGACCGTGAGAGGCTGCTGGGCTGGACCCTGTGCAGGGCAGGAGACCTCCAGCTCACTGCCTCACAAGGAAGCTACTCTTCCCAGTCAGACCCAGGCTGCTGCTACTGTTGCTTCTCTGCAGTGGTCCCAGCCCCGAGCCCGGACCCCCACCCTTTTCTCAGCCTCCCAGTCTCTGGGGCTCCAGGAAAACCTGGAAGAGCATG
Seq A exon
GTTAGGTTTCTTCCTGTTTCCTGTTGGGGAAGTGGGCATCTCATAGGATAAGCACTCTGGTGCTAGACCATGTATTGCTGGGCTCAGGGCCTCCTTCCCACCTGGCAAAGGGAAGCCACACTTTTTACATGTGTATGTGTACATGTTCATGTTTGTGTGTATGCAGGTGCAGGTGTGTGTGTGCATGTGCATATGTAGACCAGAGAACAACCTTGGGTATCATTTTTCAAGAATTATCTATCTTGTTTTGGACAGTGTCTTTCATTGGCCCGGAGCTTGCCCAAGGCTGGCTGGTTGAGCCCGGGGACCCACCTATCTCTGCCTCCTCAGTGCTGGGACTACAAGTGTGAACATCCAAATCTGCCCTTTAAAGTATAGGTTCTGGGGGTTGAACTCAGGTCCCCAAGCTTACAAGAAAGCACTTTACTGACCGAGCCATCTCTCCAGCTCAGAAGCCACACTTTTACTTCTGTCCCCATCAAATAATCTGAAGCTTGTAGGGTCAGGGGCTCAGGTCCATGCAATCCAAAGCCTACACACCATACAGCCTCCCTTTCCCTGAAACACACAGAAGTGGCCTAGTGTCTTGGCTGGTGACTATTGCTGTGACATACAGCCCCCTTCTCAGGCCCTGCCAGCTCCAGTTTCCAGGCCTACTTACTCTGTTCTGGCCACCTCACCCCTTTCCTCCTCTGTAG
Seq C2 exon
GTGCCTGTGGAAGGCAGTACCTGGAGCCCACAGGAACCATTCACATGCGAGATCAAGGACGGCTAGACTGTGTGGTGGCCATTGGGAGACCTCTAGGTGAAGTGGTGACCCTACAAATCCTTGAGAGCTCCCTCAAGTGTAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-Adamts13:NM_001001322:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(79.5=29.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGTGGGGACGGTATTC
R:
ATGTGAATGGTTCCTGTGGGC
Band lengths:
352-1050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: