HsaALTD0000163-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000143382 | ADAMTSL4
Description
ADAMTS-like 4 [Source:HGNC Symbol;Acc:19706]
Coordinates
chr1:150522298-150524382:+
Coord C1 exon
chr1:150522298-150522371
Coord A exon
chr1:150522372-150522752
Coord C2 exon
chr1:150523091-150524382
Length
381 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
CCCATTTCTTCTTCCCTCAGCTG
3' ss Score
9.25
Exon sequences
Seq C1 exon
GAGGGTGCTCTCGGACGGTGTGTCCCCCACTGCACTCCTGAACTTGGAGGACAGGGTCGCCGCGAGGGACGCAG
Seq A exon
GTGGGTGCCCTTGATCCAGCTCAGCCCGATGGCAGAAGAGGTTGACAAAAAAGAAAGACACCTGTTGGGGTGGCCTGCCAGACCCAGGAGTGGAGGGCTCTGAGGGCCCGGGAATTCGGACTCAGGACAGGGATTCTCCATGGCTAGGCCCAGAAACACAGGGTCCAACCACTCTCCAGCAGGGAGACCTGGGGGTGAAGGGGTGAGCCCTGCGCAGGTCTCTGTTCCTTGGTCTTCACTGGGCAGTGTGGAGAGGTGTGGCCAGGAGGAGCCCGCGTTTGTCCAGACCAGGGTCTACTCTGGCACCAGAGTGACCACCTCTGACCTCTCCTTTCCTCGTCCTGGGCCGGGAACGACACCAAATGAGGGACATGGAAAGGG
Seq C2 exon
CTGGAGTAACAAGAGTCAGGCAGAGCCTGAAGACTTGGGTGGAACATGGGCCCTTCTCTGGAGATCCTGGCCTCCCCCGTTCAGTCAGGGTGGAGTTGCTGACCTTAGTGGCCGGCCCAGCCAGGGGAAGGAGTGGCCATCGGCAACCCCCACCCCAACCCCAATCCCTGAGGCGCCCGCTCTGGCTCAGCCACTCTGACCCCTCCCTCAAATTCCGAACCCTAGGTCTCAGGGAGGGCAGTGGGGCTGAGTGTCTGCCCCCAGGCACATTCCTACCCTTCTCTTGGTCATTTTCTGCCCCAGAGCTGGCCCACCTCAGCAATGCGAGGGCTCCCTGGATTCCTCTCCCGGGTGCCTTTCAGATCCAACAGAAACAGATTTTTTTTTTCCTGGAAAGCAGAACTAAGAGTGGGATGAGGAGCAGGGGTGGGAAGGACTCAAAGTGAGAAGAAGGGGGCAAAGAGAGTCAGGCTTGGTGGCTGGGGTGGCTTCCAAGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143382-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAACTTGGAGGACAGGG
R:
AGCTCTGGGGCAGAAAATGAC
Band lengths:
346-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)