HsaINT0004356 @ hg19
Intron Retention
Gene
ENSG00000143382 | ADAMTSL4
Description
ADAMTS-like 4 [Source:HGNC Symbol;Acc:19706]
Coordinates
chr1:150522298-150524784:+
Coord C1 exon
chr1:150522298-150522371
Coord A exon
chr1:150522372-150524680
Coord C2 exon
chr1:150524681-150524784
Length
2309 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCAGGCTTCTGTCCCTGCAGAGA
3' ss Score
8.68
Exon sequences
Seq C1 exon
GAGGGTGCTCTCGGACGGTGTGTCCCCCACTGCACTCCTGAACTTGGAGGACAGGGTCGCCGCGAGGGACGCAG
Seq A exon
GTGGGTGCCCTTGATCCAGCTCAGCCCGATGGCAGAAGAGGTTGACAAAAAAGAAAGACACCTGTTGGGGTGGCCTGCCAGACCCAGGAGTGGAGGGCTCTGAGGGCCCGGGAATTCGGACTCAGGACAGGGATTCTCCATGGCTAGGCCCAGAAACACAGGGTCCAACCACTCTCCAGCAGGGAGACCTGGGGGTGAAGGGGTGAGCCCTGCGCAGGTCTCTGTTCCTTGGTCTTCACTGGGCAGTGTGGAGAGGTGTGGCCAGGAGGAGCCCGCGTTTGTCCAGACCAGGGTCTACTCTGGCACCAGAGTGACCACCTCTGACCTCTCCTTTCCTCGTCCTGGGCCGGGAACGACACCAAATGAGGGACATGGAAAGGGGTGAGAAGCATAAATGTGCGTGTGTTTCTGCAGAGGAGGGGGCATGGGCCCCTGCCGGGCTGCGCAGGGGAGGGTGGGGTGGGACTTTTCCAGAGAGGGAGCCAGGCCTGGCCCGGGCCCCGGGAGCTCACGTCACCCCCACCCCTCACTTCTCCAGGGAACTGCCAAAGCCAAACCCAGCTCGGGATGGGATTATGTGTACTGGGTAGACCCGTGGAGAGGGGCTGCGAGAAGAGATCTCGGTGGCAGAGAGAAGCAGAGGCAGAGAGGGCATGAAGAGGGGTCGGCATCAGAGAAGGGGCAGGCAGTGACTATCACCCCATTTCTTCTTCCCTCAGCTGGAGTAACAAGAGTCAGGCAGAGCCTGAAGACTTGGGTGGAACATGGGCCCTTCTCTGGAGATCCTGGCCTCCCCCGTTCAGTCAGGGTGGAGTTGCTGACCTTAGTGGCCGGCCCAGCCAGGGGAAGGAGTGGCCATCGGCAACCCCCACCCCAACCCCAATCCCTGAGGCGCCCGCTCTGGCTCAGCCACTCTGACCCCTCCCTCAAATTCCGAACCCTAGGTCTCAGGGAGGGCAGTGGGGCTGAGTGTCTGCCCCCAGGCACATTCCTACCCTTCTCTTGGTCATTTTCTGCCCCAGAGCTGGCCCACCTCAGCAATGCGAGGGCTCCCTGGATTCCTCTCCCGGGTGCCTTTCAGATCCAACAGAAACAGATTTTTTTTTTCCTGGAAAGCAGAACTAAGAGTGGGATGAGGAGCAGGGGTGGGAAGGACTCAAAGTGAGAAGAAGGGGGCAAAGAGAGTCAGGCTTGGTGGCTGGGGTGGCTTCCAAGCCTCACTTCTCCAGTGTTCAAAGCTGAACTTCAGATGGACTTCCCGGCTCTTCAGAATGAGAGGCCTGTGGCTGGGGCATGAGGCAGCCCCGGCTGCACCTCTCCTTCCCGCTTCCCCAGCTGGTAGAGACGCACAGGAAACAAGCCCTCACTGAACCAACTCCAGATGCTGGCACCCAGAGTGGGTGTTACATTGCCGGCTTCTTCTCTAGAGATTAAACCGTCAACCCATTTAGCTTATCCCTTGGCCAAAAAGTGTATGAGATGTGCCTGGATGTTCCCTAAAGAGCTTATCTAAGAAGGGAAGAGAAAGCCGGGAGGCAAGTAGGACAGAGAGATGACTGGGGAAGGTCTTGTGTCTGGAAGACCCAAGGAAGGGGCTTCTGGTGGGTCCTCAGAGAGAGTGTCTGGCGCATCCTCAGTGGAGCCTTCCTCCTCTACTTTCTAGGCACCTCTGGGAGGGCAGGAGTGGGAGCAGATGACAACCATTTTAGAAGGAGCCCTCTGGCTGGGTGCGGTGGCTCACACCTGTCATCCCAGCACTTTGGGAGGCCAAGGCAGGAGAAGCGCTTGAGGCCTGGAGTTCAAGACCAGCCTGTGCAATTTAGCTGGATCCCATCTCCACCAAAAAATACCAAAATTAGCTGGGTGTGGTGGTGCACGCATGTAGTCCCACCTACTCAGGAGGCTGAGGAAGGAGAGCCTGTGAGTTTGAGGCTGCAATGAGCTTTGGTGGCACCACTGCCCTCCAGCCTGGATGACAGAGTGAGATCTCCATCTCAAAAAAAAAAAAAAAGCCTTTTGTGTGTGCCTGAGCCGGCTTAGAAACAGTCCCTAGGTAGGATTTGGGGAGGAGCTAAGAAGCCCCTACAGGGCCCAGAGGTGGGGACTGAGCCTTAGTTGGAGGGCTGAGGTCAGCCCCTGACCATGTAGCCTCTACAGATGGACAAGGCAGTGATCCTCCCTGCTCCCACCCTGAGGATCCTAAAGGGATGGACCAGTTTCACCCCCTCCTCCATATTCTCTGAGCTGTCCTCCCAGCCCCAAGCTCTCTGGACACTGGAGAGGTAACCACCAGGCTTCTGTCCCTGCAG
Seq C2 exon
AGAGCACCCTCCACGCCCAGATGCCTGCGTAGTTTTTGTGACCAGTCCGCTCCTGCCTCCCCCTGGGGCAGTAGAGGGGGAGCGATGGAGAACTGGACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143382-ADAMTSL4:NM_025008:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)