MmuINT0011565 @ mm9
Intron Retention
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95489379-95491781:-
Coord C1 exon
chr3:95491744-95491781
Coord A exon
chr3:95489477-95491743
Coord C2 exon
chr3:95489379-95489476
Length
2267 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
CCATGCTCCTCCCTCCTCAGAGC
3' ss Score
9.91
Exon sequences
Seq C1 exon
ACTACCAGAGGCAGCTGGAGAGAGCGGGCGCAGAGAAG
Seq A exon
GTAGAACCTCCCCGACCCCCCGCCTGGGCTCTGACTGTCTCAGAACAGCGGACCCTAAGGCGAATTCCTGGGGAGGGGGTCTGGTCCCTGGGACTCCGAGTCCCATCACCCGGGCGAGGGCTTGTGCCAAGATTCCTATTAAGTCACATAGTGAAGTTGGAAAACATACCCAGGACCTCCCTGCACGCCGGCACAGCCGGCTCTTCCCTGAGGGGCTTCGGGAAGATGCGACCAGACGCCTGTACTCTGGGAACGCAGGGATAGGGTGTCCGGGAGGGATGCGGGTGAGTGCTCTTTGCACAACTCAATCTGTTGTGAGAGGTTGAGGGAAAAGACACCTGTTGGGATGTTTGGGGGGGGGGGGATGCCGTGAAAACCCTGGCATTCTGACAGGACAGCATCTCTCCTCTGCTAGCCCAGCCCTTACTAACCCTCCCTCCACCCGTCCACTCTGCATTGGCTCATTTGCCTGAAGTGAGCCTGGGGTGAAGGGGTTAGCACCCTGCAAGTCACTTTCCTTGGTGTCACTGGCCCACAAGGGGGTGTGACCAGGAGCAGCATAGGTTTGTGCTCAGCCAGGGTCCACCGTGACTTCAGGATGCCCACTTCCAACCTCATTTTCCTCACCCTGGGCGTGGAGAAAGGACAAACATACATTTGTGCGGGGGGGGGGGGGGGTGTCGGCTCCTGCTCCCCTATGCAGGGGAGGGTGGGGTGGACTTTTCCAGAGAGGGAGCCAGGCCTGGCCCTAGCCCCAGGAGTTCTCGTCACCCCCCACCCCTCACTTCTCCAGAGAGCTGCCAAAACCAGCTCAGGACAGGATTATGTGTACTGGGTAGACCACGGAGAGGCATCAGGGACAGACTGGAGGAGCAGAGAGGCGCAGAGGGAGGTGGAGAGGGGACCAGCATCAGACAGGTTGTGTCCATCACACACACCCCCCATCCTTCCAGCCTCACTGGGCAGGCAGAGGGCTGATGAGTGGGTTGAACAGGGCCACTCGTCCATCAGGGAAGTCGTAGATTCAGTGGCTGGCTCAACTGAAGAAGGACGTGGTGCCTTTTACCTCCTCCCTAGCTCCAAGAACTCAGCTCAGCCCATTTGGTCTCCTCCTCAAATTCCCAAGCCCTGGGGTCCCAGGGAGGGGGAGCAGGACCTAGCTTTGCCCCCCTCTCTGTCCTTTGCATGCCCTGATCTGGCCTACTTTGGCCAGCGATCCTTGGATTCTTCTCATGGTGCCATTCAAAGGCAGCAGAAACAGTGTTTTTCCTGGAAAGCAGAACTTAGATGGGATGAGGATGTGGGTAGGCGGGGCCTCAAAGAGAAGGCAGGGAATGGAGGATGGGGGTAGGGAGAGACAAGATTTGAGGACAGGTATGAAGACCCCTGCTACCCAGTGTTTACAGCTAGACTTAAGGGTGGACTTTCCAGGGATACGGGAGGGAGAACCTGGCAAGCATGGGCTGCTATGGCTACATCTCTCCTTCTTAGGTGTCCCAGTTTGGCTGAGCATTGTAAGGAAAAAAAAAAAAGCAGAAAACTAGTTGTACATGAGCTAAGTCACCCTGAGCCAGTGCCTTGTGGATGCTGGCACTCATGGGGAGGATAAGTCACTGCCTCTTCTCAGGAGATGAAGCCATTAACCCACTTAGTTTATCCCTTGGACAAAAAAAAATGCCCGGGGCAGCCTGTATGAGCCTTGTCCTCCGTAAGGAGCTTAGTTAAAAGGAAAAGAAACAAATGCTCTTGGGTTCTGTGAGCGGGAGGAGGTTGGTTTTCCTTTTTTTGTTGTTTGTTTGTTTGTTTTGTGATAGAGGTCCCATATCACCCAAGCTGAACCCCTTGAACTCCATCCCAACTGTGGAATTAAGGCTTGTGACCCCACCCCTGGTGCCCGGAGGCCTCTGGCTGGCCCCTCATGGGTGACTGGCATAGCCTGCCTCCTCTAGGCCCTAGAGCTCTAGGAGAAAGAAGCTCTGGCCCAAGCTGCCTATGCACAACCCCTACCCCCACCCACATCAGCCTCCAAAGGAGCTAAGTCCATCTTGGGCCATAGGGAGGAGACTAAACTGAACTAAGAGGCTGAGGTCAGACCCCCCACCCTCTAGCAGATGACAAAGACAACGTCCCTTCTTGCTCCCACCCTTAGGTCCTAAAGGGGTGGACCATTCCTCCCCCACCCCTCCAGGCTGTTGGTGTTGTGCTGAGACAGCCCTTCAGTCCCCCCAGATAGCTGGAGGGGTAACGCCATGCTCCTCCCTCCTCAG
Seq C2 exon
AGCACCCTCCAAGCCCCGATGCCAGAGTAGCCACCCTGTCCCCTGCTCCCCAGCCCAGGGGCAGTCACAGGAAGAGCAATGGAATCTTGGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850-Adamtsl4:NM_144899:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: