Special

MmuALTA0001183-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95489379-95491840:-
Coord C1 exon
chr3:95491744-95491840
Coord A exon
chr3:95489477-95489594
Coord C2 exon
chr3:95489379-95489476
Length
118 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
CTTCTTGCTCCCACCCTTAGGTC
3' ss Score
11.17
Exon sequences
Seq C1 exon
GGCGTGGGGCGGAGCCTGCCGCGGGCGGCGCTGTCCTGGGGCTCCGGGCCGCGGTGGCCACTACCAGAGGCAGCTGGAGAGAGCGGGCGCAGAGAAG
Seq A exon
GTCCTAAAGGGGTGGACCATTCCTCCCCCACCCCTCCAGGCTGTTGGTGTTGTGCTGAGACAGCCCTTCAGTCCCCCCAGATAGCTGGAGGGGTAACGCCATGCTCCTCCCTCCTCAG
Seq C2 exon
AGCACCCTCCAAGCCCCGATGCCAGAGTAGCCACCCTGTCCCCTGCTCCCCAGCCCAGGGGCAGTCACAGGAAGAGCAATGGAATCTTGGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850-0-4,0-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000113424





     
                   









    
Main Skipping Isoform:
ENSMUSP00000015994





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000120844
          









    
Other Skipping Isoforms:
ENSMUSP00000015994f480A
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:150524565-150524566 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr3:20195549-20195550 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CGGTGGCCACTACCAGAGG

				
R: 
CCCAGCCAAGATTCCATTGCT

				
Band lengths: 
141-259

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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