HsaALTD0000163-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000143382 | ADAMTSL4
Description
ADAMTS like 4 [Source:HGNC Symbol;Acc:HGNC:19706]
Coordinates
chr1:150549822-150552308:+
Coord C1 exon
chr1:150549822-150549895
Coord A exon
chr1:150549896-150550276
Coord C2 exon
chr1:150552205-150552308
Length
381 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
CCAGGCTTCTGTCCCTGCAGAGA
3' ss Score
8.68
Exon sequences
Seq C1 exon
GAGGGTGCTCTCGGACGGTGTGTCCCCCACTGCACTCCTGAACTTGGAGGACAGGGTCGCCGCGAGGGACGCAG
Seq A exon
GTGGGTGCCCTTGATCCAGCTCAGCCCGATGGCAGAAGAGGTTGACAAAAAAGAAAGACACCTGTTGGGGTGGCCTGCCAGACCCAGGAGTGGAGGGCTCTGAGGGCCCGGGAATTCGGACTCAGGACAGGGATTCTCCATGGCTAGGCCCAGAAACACAGGGTCCAACCACTCTCCAGCAGGGAGACCTGGGGGTGAAGGGGTGAGCCCTGCGCAGGTCTCTGTTCCTTGGTCTTCACTGGGCAGTGTGGAGAGGTGTGGCCAGGAGGAGCCCGCGTTTGTCCAGACCAGGGTCTACTCTGGCACCAGAGTGACCACCTCTGACCTCTCCTTTCCTCGTCCTGGGCCGGGAACGACACCAAATGAGGGACATGGAAAGGG
Seq C2 exon
AGAGCACCCTCCACGCCCAGATGCCTGCGTAGTTTTTGTGACCAGTCCGCTCCTGCCTCCCCCTGGGGCAGTAGAGGGGGAGCGATGGAGAACTGGACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143382-1-13,2-13,3-13-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains