HsaINT1036202 @ hg38
Intron Retention
Gene
ENSG00000237781 | RP11-54A4.2
Description
NA
Coordinates
chr1:150548562-150554732:-
Coord C1 exon
chr1:150554535-150554732
Coord A exon
chr1:150548751-150554534
Coord C2 exon
chr1:150548562-150548750
Length
5784 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
GCTTCGGTTTTTTTCCTCAGTAA
3' ss Score
6.32
Exon sequences
Seq C1 exon
CCACCTGACCCCCAGTGATGGCCTTCCCAGGGGAGTCCGGACAAAGCGTGTCTCCCACACCTCCTCCTCCCACCCCGACCCTTCTGCAGACCACTCACCACCTGTGCTGTCTCCTGACCCAGCCCCAGGGAGAAGAAAGAAGGCATGGCGCAGGGGAAGCAGAGGGGCTGGAAGTCATTCAGGGCTGGGAGTAAGCAG
Seq A exon
GTATCTCCTCTCCCCTTCATCCCCAATTCCAAGCCACCACTGCCCAGGGGTGAGCAAGAAACCTCACCTTCAGTGAAGGGCTCCCACTGATACAGCTGGCCCATGAATTCCTGGGAGTTAAAGGCTGCGCACTGCAGGGCCCGGGGGTCTGGCTGCTCAGGGGGGCAGGGCTGCGGTGAGGGGTACAAAGGAGTCAGAGCTGGGGAGCAAAATGAGGGTAGGGGCAGGGCTGAACCTGGGGAGCAGGTGGGAGGCTCAGGTCAGCGGAAGAGCTCCAAGACCCCTGCCCTGAGGTGGTCAGATGCCAAGGCCCTTCTCCCTCAGGTGCCAAGCGGAAGCTGAAGACCCAGCTTCAGGGCAGGGAAGCCACACTGGAGGTCGGGGTTGGGAGGGGAGGCCCGAGGAGACTCACCGCTTGGCTGCAGGCTCTTAGCTGTTCACTCTCCCCAGAACATCTTGGAATAGGGCTACTGGGAGCAAAGAGGCTCCAGAGGGAGCTGGCATGGGGGCCGTTGCTCAGCAGGGGCAGCCAGGCGCCCGGGTGCTGAGGGTCAGGCTCCAGGCGGGGCCCGTGAGGAGTCCCCCCCGTTCCCCAAGGCCCTTGGCCCTGCTGGCCTCGGCCCCGAGGGACCGAAGGAAAAGGATCAGGGCGTCTCCCTGCTACCTGGGGACTGGCCCAACCCTGGGAACTTGGCCTTCGTGGCTGAGGGGATGCACGGAAGAAGCCACCTTCTCCTAAGGAGTGCGTGGGTGAGGGGGGCTCTGTGCCAGAGGCCTGGGCTCTGGGGTGATGCCGTAGGGGGGCAGGCCTGGTTCTGGGGGCCACCTCTGTCTGAGCAGTTTCAGGGCTTAGAGGTTCTGCTTGGGGGGATGGGGTGTGGACAGACAGTTCTGTGGGAGGGAGCTCAGTTTGGGGGCTGCCGTTTGCGGAGAATGGCTCTGCTCTTGGAGTAGGGGACGGAATAGCCTCTTCCCCTCTAGAAGAGATCAGGGACAGCTCAGATCTGGGTGGGCTCCGAGGGTGCCTGCGGTTCCGGTGCAGTGGCAATGCAAAGGGCACTCTCCCATAACCGAACATTCCTGGCTTGATGGGGTCTCGAAGCCGGGACCTGAGAAGGTGTTTCAGATGTGGGGGCACAGCTCTGACCACCTCTGACCCTGTTTCCCCAGTTTACTTCCTGGCACCAAAGACAAGCCCTCTGAAGCCACCCGTGCTCCCCTTTCCTTCATGCTAAGCCCCCACCTTGCCCAAGGCCCACCTCTTCCACCCAGGCCTCTCACCTCCTGGCCGCTCGAATCTCCTGGGTCTCCTCTCTCCCTAGGTGGGAAGCGGGACCTCGAAGTGGGCCACCCCTTCCCCGAGACTGTGTCCTGTACAAGGGGAGGGTTTCTGGAGAAGTCTGGGGTCTGGGACCCTGGCCCCGGGGGAGGAGGGCTTCTGGATGTCTTGGGGGCCGGGGAGGGAGGGGCAGACTCGGGTGGAGCTGCACTGTAGGGAGCTGACATGTCCGGCTCCTGCGCTGCACCCCCACCCCGCAGGGCTGGGAGCAAGAGGCCCACTGGACCCAAGGTCCCCAGACACCTTCGGGGCCCTGGCCCTCCTCTGTAGGTGTCTGAAGAGAGTGTCCGGACAACACCTATATAGAGAAAAAGGTCAGACAGAATTGGAAGGATTAGAGGGAACTGTCCAGAGTGTCCATGTAGACCAACACTGAGGCTCACGGAGTCGCTACCAGTCCAAGGTCACATTCAGCAGCAGAGGGAGAACTACACCTCGGCCTCTTGGTGTTATGAGGCAAGGAACTGGGGAGTTGGCAGGGGAGGTGGGTGGGCTGTGGGGAATGGAGGCGTGGCCTGGAGAGATGGGGTGGGAGCCTAGGGGGAGATGAAAGGGTGGCAGGCAGGCTGCAGCTGCTCACTTGTCCAGAACTCACCTCCTGATCCAAGCAGAGCTGAGGGAGGGACAGAAGCAGCAGCAGATACAGCCAGGGCCTGCAAACCAAAGGCCAGGGGAGGGACGTCAGACTGGAGCCAGAGGGGGTGTTGCAACACTGCCCTCCGCCCCCAGCCGGCTCCCATATCCTGACTACCAACTTCTCAGAAAGCAGAAGTTACTCATCACTTCCCCTGCCCCTCCCAGTGGTCCCCTTTCCCTCACTTCCAGACACAGAGCCATCCCAGCACCTCCCCTTTTCCTCCCCCCCAACCCGTGGCCCCTTCTCTCACCTGCCAGTCCAGTTCTCCATCGCTCCCCCTCTACTGCCCCAGGGGGAGGCAGGAGCGGACTGGTCACAAAAACTACGCAGGCATCTGGGCGTGGAGGGTGCTCTCTGCAGGGACAGAAGCCTGGTGGTTACCTCTCCAGTGTCCAGAGAGCTTGGGGCTGGGAGGACAGCTCAGAGAATATGGAGGAGGGGGTGAAACTGGTCCATCCCTTTAGGATCCTCAGGGTGGGAGCAGGGAGGATCACTGCCTTGTCCATCTGTAGAGGCTACATGGTCAGGGGCTGACCTCAGCCCTCCAACTAAGGCTCAGTCCCCACCTCTGGGCCCTGTAGGGGCTTCTTAGCTCCTCCCCAAATCCTACCTAGGGACTGTTTCTAAGCCGGCTCAGGCACACACAAAAGGCTTTTTTTTTTTTTTTGAGATGGAGATCTCACTCTGTCATCCAGGCTGGAGGGCAGTGGTGCCACCAAAGCTCATTGCAGCCTCAAACTCACAGGCTCTCCTTCCTCAGCCTCCTGAGTAGGTGGGACTACATGCGTGCACCACCACACCCAGCTAATTTTGGTATTTTTTGGTGGAGATGGGATCCAGCTAAATTGCACAGGCTGGTCTTGAACTCCAGGCCTCAAGCGCTTCTCCTGCCTTGGCCTCCCAAAGTGCTGGGATGACAGGTGTGAGCCACCGCACCCAGCCAGAGGGCTCCTTCTAAAATGGTTGTCATCTGCTCCCACTCCTGCCCTCCCAGAGGTGCCTAGAAAGTAGAGGAGGAAGGCTCCACTGAGGATGCGCCAGACACTCTCTCTGAGGACCCACCAGAAGCCCCTTCCTTGGGTCTTCCAGACACAAGACCTTCCCCAGTCATCTCTCTGTCCTACTTGCCTCCCGGCTTTCTCTTCCCTTCTTAGATAAGCTCTTTAGGGAACATCCAGGCACATCTCATACACTTTTTGGCCAAGGGATAAGCTAAATGGGTTGACGGTTTAATCTCTAGAGAAGAAGCCGGCAATGTAACACCCACTCTGGGTGCCAGCATCTGGAGTTGGTTCAGTGAGGGCTTGTTTCCTGTGCGTCTCTACCAGCTGGGGAAGCGGGAAGGAGAGGTGCAGCCGGGGCTGCCTCATGCCCCAGCCACAGGCCTCTCATTCTGAAGAGCCGGGAAGTCCATCTGAAGTTCAGCTTTGAACACTGGAGAAGTGAGGCTTGGAAGCCACCCCAGCCACCAAGCCTGACTCTCTTTGCCCCCTTCTTCTCACTTTGAGTCCTTCCCACCCCTGCTCCTCATCCCACTCTTAGTTCTGCTTTCCAGGAAAAAAAAAATCTGTTTCTGTTGGATCTGAAAGGCACCCGGGAGAGGAATCCAGGGAGCCCTCGCATTGCTGAGGTGGGCCAGCTCTGGGGCAGAAAATGACCAAGAGAAGGGTAGGAATGTGCCTGGGGGCAGACACTCAGCCCCACTGCCCTCCCTGAGACCTAGGGTTCGGAATTTGAGGGAGGGGTCAGAGTGGCTGAGCCAGAGCGGGCGCCTCAGGGATTGGGGTTGGGGTGGGGGTTGCCGATGGCCACTCCTTCCCCTGGCTGGGCCGGCCACTAAGGTCAGCAACTCCACCCTGACTGAACGGGGGAGGCCAGGATCTCCAGAGAAGGGCCCATGTTCCACCCAAGTCTTCAGGCTCTGCCTGACTCTTGTTACTCCAGCTGAGGGAAGAAGAAATGGGGTGATAGTCACTGCCTGCCCCTTCTCTGATGCCGACCCCTCTTCATGCCCTCTCTGCCTCTGCTTCTCTCTGCCACCGAGATCTCTTCTCGCAGCCCCTCTCCACGGGTCTACCCAGTACACATAATCCCATCCCGAGCTGGGTTTGGCTTTGGCAGTTCCCTGGAGAAGTGAGGGGTGGGGGTGACGTGAGCTCCCGGGGCCCGGGCCAGGCCTGGCTCCCTCTCTGGAAAAGTCCCACCCCACCCTCCCCTGCGCAGCCCGGCAGGGGCCCATGCCCCCTCCTCTGCAGAAACACACGCACATTTATGCTTCTCACCCCTTTCCATGTCCCTCATTTGGTGTCGTTCCCGGCCCAGGACGAGGAAAGGAGAGGTCAGAGGTGGTCACTCTGGTGCCAGAGTAGACCCTGGTCTGGACAAACGCGGGCTCCTCCTGGCCACACCTCTCCACACTGCCCAGTGAAGACCAAGGAACAGAGACCTGCGCAGGGCTCACCCCTTCACCCCCAGGTCTCCCTGCTGGAGAGTGGTTGGACCCTGTGTTTCTGGGCCTAGCCATGGAGAATCCCTGTCCTGAGTCCGAATTCCCGGGCCCTCAGAGCCCTCCACTCCTGGGTCTGGCAGGCCACCCCAACAGGTGTCTTTCTTTTTTGTCAACCTCTTCTGCCATCGGGCTGAGCTGGATCAAGGGCACCCACCTGCGTCCCTCGCGGCGACCCTGTCCTCCAAGTTCAGGAGTGCAGTGGGGGACACACCGTCCGAGAGCACCCTCCTAGAGAGAGGGCAGGAGGCACCGGCCGCGCGGGGAGGTCATGGGTCTGTTTTCCAACTTTACTATGTGACTTAGGAGGAATTTTGGTTCACTCCCCGCCCGGGTGATGGGGCCAGAGTTCCACGGGATCAGACTCCCTCCCCAGGAATTCGACCCCAGGGGCTGGAAGATTGTCCGAGGCCACCGGAGCTGGGTCCGGGGTCGTGGCGGGGTCGCGACCGCACAGCGCAGGGAGAGGGGACGACGCGGGCGCGCGGGGCGGGCGGTCTAACGGGACCCGGGAGAGGGGCGGCCGGGGCCGGGGTCCCGGGGAGGTCTCTACCTGCTCTGCGAGCCCCCGGTGGCCCGTTAACCCTTCTGCGCCCAGGCGCTCTCTCCAGGCAACCTCGCTCCGCGGCGGCCACTGGGGCCCCTGAGCCGCGCTCCGGTCACGGCCGCCTCGGCCGCAACTCCGCCCTCGCGCCCGCCCCCGCCCAGCCCCGCCCGCCACGCGCCCCAGCCCGCGCCCCTCGGCGGCCCCGGGGTGGGGCCGGTCTGCCTCGCAGCCCCACTCGCCAGGACCACCCACCCCGGGCTGCGCGCCGGGCGCCCCCCGACGGCTGCGTGAGCTGAAGCCCGGGCTGGCCCAGCCGGGGTCGGAGGCTGCAGTCGCTCCCGGGCGCTGTCCTCGTGCCCGGCCGAGACTAGGGACTTAAGCAGCCCGGGCTGGCCCAGCCGGGGTCAGAGGCTGCAGTCGCTCCCGGGCGCTGTCCTCGTGCCCGGCTGAGACTAGGGACTTAAGCAACCCGGGCCTCCGAGCCGCTCGGGTGAGCGGTGCGAACACGGCGCGGCGCGGCGCGGCACAGGCGGGGCAGCCTCCAGGGGCGCCTGGAGCGAGGCGGCCTGGGAGAGCCGCTGGTCCGGGAGGGAAGCGCCCTGGACGGAGGTACCCGCGGCCCCCGATCCGCGTGGGTCCAGGCTCTCCCCTCCACGCAGCCTCCCCTGCAAACTCAGTCACTCCTGCCTCTCCCGTGTTGGGCAGTGGTGGTTCAGATTGCTGGGACTTCTATGAGCTTCGGTTTTTTTCCTCAG
Seq C2 exon
TAAGGTTTTACACTCGGGACTCAGCGAAAGGACAGCGTGCTGACTTCTGAGTCAGACTGATCTGGATTTGAACCTCAGCTCCAGCTCTTGCCAGCTATGTGGTCTTCGACGAATACTTCCACCCCTGTGTGGTGCAGTTTGCTCATCTGCAAAATGGGACTAATCTAATATATATGATGGGCTTGGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237781:ENST00000442435:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains