HsaEX0002601 @ hg38
Exon Skipping
Gene
ENSG00000143382 | ADAMTSL4
Description
ADAMTS like 4 [Source:HGNC Symbol;Acc:HGNC:19706]
Coordinates
chr1:150549369-150550213:+
Coord C1 exon
chr1:150549369-150549499
Coord A exon
chr1:150549822-150549895
Coord C2 exon
chr1:150550113-150550213
Length
74 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTGCCCTCTCTCTAGGAG
3' ss Score
11.33
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGAGTTGCGGCCGAGGCGGCCGTGACCGGAGCGCGGCTCAGGGGCCCCAGTGGCCGCCGCGGAGCGAGGTTGCCTGGAGAGAGCGCCTGGGCGCAGAAGGGTTAACGGGCCACCGGGGGCTCGCAGAGCAG
Seq A exon
GAGGGTGCTCTCGGACGGTGTGTCCCCCACTGCACTCCTGAACTTGGAGGACAGGGTCGCCGCGAGGGACGCAG
Seq C2 exon
GTCTCTGTTCCTTGGTCTTCACTGGGCAGTGTGGAGAGGTGTGGCCAGGAGGAGCCCGCGTTTGTCCAGACCAGGGTCTACTCTGGCACCAGAGTGACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143382-'1-5,'1-4,2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTTGCCTGGAGAGAGCG
R:
GTGGTCACTCTGGTGCCAG
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development