HsaALTD0000198-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000204305 | AGER
Description
advanced glycosylation end-product specific receptor [Source:HGNC Symbol;Acc:HGNC:320]
Coordinates
chr6:32183114-32183388:-
Coord C1 exon
chr6:32183324-32183388
Coord A exon
chr6:32183276-32183323
Coord C2 exon
chr6:32183114-32183201
Length
48 bp
Sequences
Splice sites
5' ss Seq
GAGGCGAGT
5' ss Score
2.28
3' ss Seq
GGTCACCACTCTTTCCCCAGGTG
3' ss Score
9.29
Exon sequences
Seq C1 exon
AGATTCCTGGGAAGCCAGAAATTGTAGATTCTGCCTCTGAACTCACGGCTGGTGTTCCCAATAAG
Seq A exon
GTAGTGGAAGAAAGCAGGAGAAGTAGAAAACGGCCCTGTGAACAGGAG
Seq C2 exon
GTGGGGACATGTGTGTCAGAGGGAAGCTACCCTGCAGGGACTCTTAGCTGGCACTTGGATGGGAAGCCCCTGGTGCCTAATGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204305-7-6,8-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=NA C2=0.392
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(3.0=7.7),PF082057=C2-set_2=PU(16.7=41.0)
A:
NA
C2:
PF082057=C2-set_2=FE(30.2=100)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGAAGCCAGAAATTGT
R:
CTTCTCATTAGGCACCAGGGG
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development