HsaINT1003173 @ hg38
Intron Retention
Gene
ENSG00000204305 | AGER
Description
advanced glycosylation end-product specific receptor [Source:HGNC Symbol;Acc:HGNC:320]
Coordinates
chr6:32183114-32183388:-
Coord C1 exon
chr6:32183324-32183388
Coord A exon
chr6:32183202-32183323
Coord C2 exon
chr6:32183114-32183201
Length
122 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
GGTCACCACTCTTTCCCCAGGTG
3' ss Score
9.29
Exon sequences
Seq C1 exon
AGATTCCTGGGAAGCCAGAAATTGTAGATTCTGCCTCTGAACTCACGGCTGGTGTTCCCAATAAG
Seq A exon
GTAGTGGAAGAAAGCAGGAGAAGTAGAAAACGGCCCTGTGAACAGGAGGCGAGTGTGTGTGGGTGTGGGTGTGTGGCATCTCTCATTTTCAAAGGATTCTGAGGTCACCACTCTTTCCCCAG
Seq C2 exon
GTGGGGACATGTGTGTCAGAGGGAAGCTACCCTGCAGGGACTCTTAGCTGGCACTTGGATGGGAAGCCCCTGGTGCCTAATGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204305:ENST00000375076:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.446 A=NA C2=0.392
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(3.0=7.7),PF082057=C2-set_2=PU(16.7=41.0)
A:
NA
C2:
PF082057=C2-set_2=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGAAGCCAGAAATTGT
R:
CTTCTCATTAGGCACCAGGGG
Band lengths:
148-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains