MmuINT0012627 @ mm10
Intron Retention
Gene
ENSMUSG00000015452 | Ager
Description
advanced glycosylation end product-specific receptor [Source:MGI Symbol;Acc:MGI:893592]
Coordinates
chr17:34598730-34598984:+
Coord C1 exon
chr17:34598730-34598794
Coord A exon
chr17:34598795-34598896
Coord C2 exon
chr17:34598897-34598984
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
3' ss Seq
GGTCTCCATTCTTTCTCCAGGTG
3' ss Score
10.89
Exon sequences
Seq C1 exon
AGATTCCTGGGAAGCCAGAAATTGTGGATCCTGCCTCTGAACTCACAGCCAGTGTCCCTAATAAG
Seq A exon
GTAGTAGAAAGCCAAGAAATTAGAGAGGGTCCTTTGAATGCAGATGTGTGCCTATATTGCCTTCCACAGAGACAGATGATGAGGTCTCCATTCTTTCTCCAG
Seq C2 exon
GTGGGGACATGTGTGTCTGAGGGAAGCTACCCTGCAGGGACCCTTAGCTGGCACTTAGATGGGAAACTTCTGATTCCCGATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015452:ENSMUST00000015596:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF082057=C2-set_2=PU(16.8=72.7)
A:
NA
C2:
PF082057=C2-set_2=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGAAGCCAGAAATTGTG
R:
TGCCATCGGGAATCAGAAGTT
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types