MmuINT0012627 @ mm9
Intron Retention
Gene
ENSMUSG00000015452 | Ager
Description
advanced glycosylation end product-specific receptor [Source:MGI Symbol;Acc:MGI:893592]
Coordinates
chr17:34735675-34735929:+
Coord C1 exon
chr17:34735675-34735739
Coord A exon
chr17:34735740-34735841
Coord C2 exon
chr17:34735842-34735929
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
3' ss Seq
GGTCTCCATTCTTTCTCCAGGTG
3' ss Score
10.89
Exon sequences
Seq C1 exon
AGATTCCTGGGAAGCCAGAAATTGTGGATCCTGCCTCTGAACTCACAGCCAGTGTCCCTAATAAG
Seq A exon
GTAGTAGAAAGCCAAGAAATTAGAGAGGGTCCTTTGAATGCAGATGTGTGCCTATATTGCCTTCCACAGAGACAGATGATGAGGTCTCCATTCTTTCTCCAG
Seq C2 exon
GTGGGGACATGTGTGTCTGAGGGAAGCTACCCTGCAGGGACCCTTAGCTGGCACTTAGATGGGAAACTTCTGATTCCCGATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015452-Ager:NM_007425:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF082057=C2-set_2=PU(16.8=72.7)
A:
NA
C2:
PF082057=C2-set_2=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGAAGCCAGAAATTGTG
R:
TGCCATCGGGAATCAGAAGTT
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: