HsaALTD0000306-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41510739-41519459:-
Coord C1 exon
chr8:41519394-41519459
Coord A exon
chr8:41519319-41519393
Coord C2 exon
chr8:41510739-41513272
Length
75 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TCTCTCTTTGTGTCTCCCAGGAT
3' ss Score
10.81
Exon sequences
Seq C1 exon
ATCATTCGCAAGGTGGTTCGACAGATAGACTTGTCCAGCGCCGATGCCGCCCAGGAGCACGAGGAG
Seq A exon
GTGACTGTAGAGGGGCCCCTGGAGGATCCCAGTGAGCTGGAGGTCGATATTGATTACTTTATGAAACACTCCAAG
Seq C2 exon
GATCACACCTCGACACCCAACCCCTGAACCCCACACACTCTGCCATGCACACAGGAGGAGAGCTGGACCTGAGGGCCACCGCAGCGGTGCACACATTCCTCTGGGCTGACGGCATGACCTCTGTAAGGGACTCCTGCTAGTCCCCTCTTGGCATGAATGACTGACTGTAGACGCATGACCTCCAGGCTTCAATCCTGCCTCTTGCAATGACAGCTGATCTGTCGGAACCAGGACACAAAAGCAGCAAGAAGCGGGGAGAGAGAGGGATAGAAAACAAGCGCAGGAGAGCCTGCGAACGCAAAAGTGAATGAGGGCTTTTTGTGGCTGGGGATGGGTTTTGGTTTTGGGGTTTTTTTTTTAAATTGTTTTGACTTCGTACAGGGTACTTTTTCCCAACCTCATCTGTCAGAAATCCATGTGGGCTTCCTGGAAAGAAAAAAAAAAAAAAGAAAACTAGGCATGAAATCAGTTTAACACCTTAATCTTAAGCCATGTCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-53-62,54-62-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTCGCAAGGTGGTTCGAC
R:
GTCAGCCCAGAGGAATGTGTG
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)