RnoALTD0002684-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73681422-73681874:-
Coord C1 exon
chr16:73681809-73681874
Coord A exon
chr16:73681734-73681808
Coord C2 exon
chr16:73681422-73681520
Length
75 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
GTCTTTGATGCTGTCTCCAGGTG
3' ss Score
9.64
Exon sequences
Seq C1 exon
ATCATTCGAAAAGTCGTCCGACAGGTGGACTCCTCTGGTGCCATCGACACCCAGCAGCACGAGGAG
Seq A exon
GTGATTGTTGAGGGACCCCTGGCAGACCCTGGGGATCTGGAAGCGGACATTGAGTCCTTTATGAAACTTACTAAG
Seq C2 exon
GTGGAGCTAAGAGGGAGTGGACTCCAGCCGGACCTGATAGAAGGCAGGAAGGGGGCTCAAATAGTGAAGCGGGCCAGCTTGAAAAGGGGCAAACAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-72-65,73-65-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=NA C2=0.656
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAAGTCGTCCGACAGGTG
R:
TCACTGTTTGCCCCTTTTCAAG
Band lengths:
159-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]