RnoINT0017374 @ rn6
Intron Retention
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73681422-73681874:-
Coord C1 exon
chr16:73681809-73681874
Coord A exon
chr16:73681521-73681808
Coord C2 exon
chr16:73681422-73681520
Length
288 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATT
5' ss Score
5.41
3' ss Seq
GTCTTTGATGCTGTCTCCAGGTG
3' ss Score
9.64
Exon sequences
Seq C1 exon
ATCATTCGAAAAGTCGTCCGACAGGTGGACTCCTCTGGTGCCATCGACACCCAGCAGCACGAGGAG
Seq A exon
GTGATTGTTGAGGGACCCCTGGCAGACCCTGGGGATCTGGAAGCGGACATTGAGTCCTTTATGAAACTTACTAAGGTACCGAGGCGCTGCAGGCCCCTGGAGGCCGCAGCAAGTTCACCTCTGCCTCACCTCTACTTTGCATGCTGCCTCTCGGCTACCTTTCTGACAGACGGTGTTCTCTCCTCTTCCTCCTCCTCCTCCTCAATGTCCTGTCCCTTGTCACTTCCAGCGCGTGCTTGCTCCTCTGCCTATTTGATTCCTACTTTCTGTCTTTGATGCTGTCTCCAG
Seq C2 exon
GTGGAGCTAAGAGGGAGTGGACTCCAGCCGGACCTGATAGAAGGCAGGAAGGGGGCTCAAATAGTGAAGCGGGCCAGCTTGAAAAGGGGCAAACAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241:ENSRNOT00000064070:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=NA C2=0.656
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGTCGTCCGACAGGTGG
R:
CACTGTTTGCCCCTTTTCAAGC
Band lengths:
157-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]