GgaINT1030767 @ galGal4
Intron Retention
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2614341-2614895:-
Coord C1 exon
chr22:2614734-2614895
Coord A exon
chr22:2614440-2614733
Coord C2 exon
chr22:2614341-2614439
Length
294 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TGTCCCTGTGGCTCCCTCAGGAG
3' ss Score
8.81
Exon sequences
Seq C1 exon
GTCATCCGGAAAGTGGTGCATCAGTTGGACCTCGACACGGATGACAGGAAGGAGCATGAGGACTTGATTCTGGAGGGCTCCCTGCAGGAGCCCCAAGACCTGGAGGCAGAGGCTGATCACTTCATGTACTCCATCCTACAGCGGGACGGTCTGGGGGCCAAG
Seq A exon
GTATGGTGTGGTTCGTGGCTGTGCCTTGCAAGCACCCTGCTCAGGGCCAGCACTGCCTCTGCAGGACTTGTGGGCTCCAGGGCTCCTCCATCCTCTGTCCTTTCTTCTGTCCTGCTCATCTCTCTCACCTGTTTCCCTCCTAAGGCTGCCAGGGGCTGCTCTTGTCCCTGCACCAGTCTTCTTGCTTGGTGTCTTCTGCTGACTGACTCAGCCTTTCCCTCTCCTGTCCTTTTCTCTGTGTCTGTCTGTTCAACCTGGGTGATGTCCTGCCTCCTGTCCCTGTGGCTCCCTCAG
Seq C2 exon
GAGGAGGTGCAAGTGCGTGTCCCAAAACTGGAAGTCTCCGGGAGCAGGATGGGGGCTCAGATAGTGAAACGAGCCAGTCTGAAAAGGGGGAAGCATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594:ENSGALT00000005683:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCCGGAAAGTGGTGCAT
R:
TCAATGCTTCCCCCTTTTCAGAC
Band lengths:
261-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]