HsaINT0008066 @ hg38
Intron Retention
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1 [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr8:41653220-41661941:-
Coord C1 exon
chr8:41661801-41661941
Coord A exon
chr8:41655754-41661800
Coord C2 exon
chr8:41653220-41655753
Length
6047 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TCTCTCTTTGTGTCTCCCAGGAT
3' ss Score
10.81
Exon sequences
Seq C1 exon
ATCATTCGCAAGGTGGTTCGACAGATAGACTTGTCCAGCGCCGATGCCGCCCAGGAGCACGAGGAGGTGACTGTAGAGGGGCCCCTGGAGGATCCCAGTGAGCTGGAGGTCGATATTGATTACTTTATGAAACACTCCAAG
Seq A exon
GTACTGAGGCGCCCGCGGCCCTGGGGGACCCAGCGCCATCACTGCTGCCTTGCTCTGCCGGGCCGTCTGCATGACACCTCCCTCCACTCACCTCTTTATGAGCTCTCTCTCCAGTCTCTCTTCTCCCTGGTGGGCAGTGTGTCTGCCACCTCCGTGTGGCCTCCTTTCGATCTTCTGCCTGTGTTCTGCCCGTCTTTGCGATCTGTCCTGCTTTCTGTCTCTGCTGCTGTCTGCAGGTGGAGCTGAGAGGGAGTGGCCTACAGCCGGACCTGATAGAGGGCAGGAAGGGGGCGCAGATAGTGAAGCGGGCCAGCCTGAAAAGGGGGAAACAGTGACCCCGAGCCGCTCTCCTTGGAGTAGCCTCTCGGGAGGTAACGCTGCCCTTCTCATCCCCTCTGCATGGCCTGGTCTTCAGTGGAGTGGCTGCTCCCTGTCTCACCCTATCCCCTCCCAGCCACCCCAGCATGATGTGGGACAAACAACTTGTTGTTGTGTCTCGAGGCAGAGATTCTCACTTCCCAACCCTGCTAACAGTTGGCTCTGAACCCCAGCTTCCTCATCAAGGAAACAGAGTTAATAATATCCACTTATCAGGGACCGCACGGTTTTGTAAGAATGCCTTTTGGGCCGGGCACAGTGGCTCATGTCTGTAATCCCAGCATTTTGTGAGGTCGAGGCAAAAGGATTGCTTTAGGCCAGGAGTTCAAGACCAGCCTGGGCAACAGAGCAAGACCCCATCACAAAAAAAAGAAAAAAAAAAGCCAGAAAGAAAAAAATGCTCTTTGAAAAGTAAAAGCACTCTGTAAATCTAAGTGGTAATATTATCTTGGAAACCAAGCAATGGGGATCTAGAAAGCAGTGGACAGGGCATTGAAGAGGACAGGAGAGTTGGTCTGGGCTGTGATGCTTCAACATAAGAGCTCCAAGACTGAGGACTGGACTGTCTCTTGAACCTGGAGCCCAGCTACAGTTCTCACCAGGCCAAGGCTTAGCTTCTCTTTGGTGTTTTGTGAAACACGTTGCTCCCTTGCTTTCTAGGAAAGGGCTGAGCCGACAGGCCTAAGGGGTGGACGACGTGCTTTCTGCAAGTCAGGAGACCGTCAGGGTTGGGGCCGGGGCCTGGGCTGTGGTGCATGTGTGTGAGCATGGGGCAGTGTGGCCACAGAGCAGGGGCATGCCGTGCCGTGCCGTGCCATGAGGAAGGGACATGAAGACGCTGTGCGACCATCTCCAGCAGGTGTGTGTGGTGCTGGGGGCTTCAGCGGCCGGCTCTGATCTCCATCCTCCCTGGGGCATCCTGTACTGAGCTGCCCCGAGGCCCTTCATGCTGCCCAGCTCGGGGCAGCTCAGTACAGGATACCTCGGGGTGGGAGTCAGCAGGAGGTGAGGGGGCATGGTGGCCCCAGTGCAGCACTAACCAGGCCGTTACCATTCACACCCCAGGGCCTGACTCTGGGACCGAGCAGCAAGGAGGCTCTAGCTTTCTGCATTCGGCAAAAATCAGGGCCCGCTGCCTCCTGAGCCACCAAAAGTGCTGACTCTGGGCTTCCCAATATATCTCAGCACTTGGGCAAAAAAGAGGACTGGCAGATCCAGTTATAGGATAAAATTAGACCTGACACCTCAGCAGCTTAAGGAGGTCACCGTGTTAACCCCTGCACTGCCAGGGGTCCCACTAGGCTGCTGGTTTAGAAGACTCTGAGTAGCTGCTGTTGGGTCCTGGAAAGAACCCAAAGATGCAAATAATGTTTAAAAGCAGCAAAGGGAAAGGAAAAGTACACTTTTCTGACTTATTTTTCTTATGGTAGCAGTGGCGGCTGTGGCTTTAAATTTCTCTTTGGCTCAGGCTCTATGGATGCTCCTGAGTGGGAGAGAGGCAGCCCGAAAGCCAGGCTAGGGGGAAGGAGGGAGCCTTGAATTTCATTTTAATTTGCCGTAAGTGATCTGCAATGTGGCTGAAGCCCCCCAACCTCAGGTGATTAAGGACCGGACCACACTAGCATGGGTGTCAGAAACACGGAGCAGCCTGGCTCTGGGACAGCACTTGGCCCTCTGTCAGTGACAGGCACAGGGACAAGTGTGAGGGTGGCAGGGGGGTGGGGCGGTGGGGCGAGAGCAGTGGTGAGGGAGAGGCGGAGAAAAGCTCCTGCCAAAGTCCCAGAGGGTTAGGGGACAGCATTAAATGCCCTACCCTCCCAACCAGGGCAAAGGCTACAGAGAAGACGGTTGAGGGCCCAAAGGCTTCCTAATTTACTATCCGCATCCCCGACAAGCATGTACAGTCGATCCTCATCATTCACGGATTCTGCATTTGCGAATTCGTCCACTCGCTAACATTTATCTGTAGCCCCAAAGCTGGCACTCACCGTGCTTTGGCTCATTCATGGACACACACACAAGGGCAGAAAGTTTGAGTCGCCCAACCCGTGCAATCCCAGCTGAGGATGAACAATGCCACACTCTGCCTCTGTGCCTCATACTATAAATAAGTGTCCTCCTTGCAGCTTGTGTAGTGCCACATTTTTCACATTTTTGGTTTCATTGTTTAGAATGGCCCCTGAGGGCAGTGCTGAAGTGCTGTCTGGTGCGAAGTGCAAGAAGGCTGGGATGTTCCTTAAGGAGGGAATGGACATCAGATAAGCTCTGCTCAGGGATGAGTTAGAGTGCTTGTGGTGGTGAAGTCAGTGTTAATGAGTCAACCCTATATATTACATAAGGCGTCTTGAAACAGAAACGCATTTAACACAAAGTTATGTATTCATCAGTTGACCAAAATATTGTGGCCAGAGGCTCATGGGAGCCTAACCTTGTATTTCCCTTAGGAGCAGTGGTTCAGTATTTGCTAATTCCGTGTTCACAGCGACTATTTATTTATTTATTTATTTATTTATTTATTTATTTATATTTTGAGAGGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACTATCTCGGCTCACTGCAACCTCCATCTCCCGGGTTCAAGTGATCTTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCACCCTTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTCGTCTCGAGCTCCTCACCTCAAGCAACCCGCCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCACAGCCTCAAACAGCGACTAATTTATAGAACAGAGCTATGGCAAATGGCTGTATTTGTTTCAGAGAGTGAAAGCTGGAGCTTGTGAGTCTAGAATCAAGGCCTCCTCCTGCTTCCAGGTTGTATGGCCTTAAGTCATTTAACCGCCCTAAGCTTCAGTCTCCTCAAGGGAGGATGAAAATGTCCCTTTCGAATGTGCTACACTTCAAGAAAAAGGTTTAGAAATAATAATGGTAACTGTGAGCACTGATGTGAAGAGAGTAAATAAGAACATATATGCTCTGGGACTCAAACAATTGCAGGTCTTGTTTGTAGTGTGACTCGGAGCAAGTCAAATGACTTCCCTAAGCCTCAGGTTCCTTAGCCATAAACTAGCAATAATGCCAGCATTTCCCTTGTAGGATGGTTATGATGGTTGCTGAGTTTATGTTTGTGAAAGGGCTGTCTAGGGCCGGGCATAGTGACTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATAATTTGAGATGAGCCTGGGCAATGTGGTAGGACCCTGTCTCTACAAAAAAAGTTTAAAAATTAGCTGGACATGGTGGCATACACCTGTAGTTCCAGTTTCTTGGGAAACTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCAAGGCTGCAGTGAGCTATGATTATACCACTGCACGCTAGCCTGGGCAACAGGGCAAGACTCTGTCTCTAAATGAAATAAAAATAAAGAATGAAAGAGACTCTTTTCTAAGCTTTTGAAAGGTGAGGGGACCCAGGAGAAGAGGCCAGAACAATGCAGGAGTCCTGGGCAGAGTGAGGTGGCCTAGGTCCTCATCTCACCCCTGCTCTTGCCACTGTGCCTCTAGAGTCTCAGTTTACCAAGGGATGAAATGGGCAGTCATGCCAGCATGATCTCTGAGGTCTGAACTTTCTCTTCTGCTCAGTGCCTGGGCGGTAAAGTAGATGGGAGATCCTAGCCTGTCTTTCCCAGGCTGCATATTCCATGATGGTCTCTTATTTGAGGAGCACTTCTTGGGGCAGGCACCGTGGGGAGCACCAGGAGGCTGTTCTTGCCCTCAGTGTTTCTAATCTAGTCAGGGAAATATGCAGACATCAAAAAGCACAGATGGACAGAGACGGTAACATTTCTAGAGAGCCAAGTAATTGTTTGCATTCATACAATGCTAAGCACCTATGTGTCTTAGCTTTTTTAAACATCACACCTCTCTAATGGGTAGGCCCTATTACTGCCCTCATTTTACAGCAGAGAAAACTGACTCACAGAGCAGGTAAGGCACTTGACCGAGGTCAGGCAGCATGGGACTTGAACCCGGGTGGTCTGGCTCCAGAGTTCATGCTCTTACCCACTCGACTCTGCCATCTCCTGAACAGAAAAGGCAGCTTTTTTCTTTTTTGTATTTTGTATTTTTACAAAATACAAAAGGGAGAGCTTCCAGAGTGGAGAGGGGCCTGCTCCAGGAAGGATCAGGAAGGTTTTGTGGGGTGGAGGTGTTGAGGGCGGCAGGCAGAACCTCTGCAGAAAAGAGAATGGAAGGCAGCCTTGACAGAAGCGTGACCGAAGGCAGAGAACAGGAGGGTAGAGCGTGTTCAGAGGCTTAGAGGAGACAGTCAGACTTGGCCGATGTGATGGCCCAGCAGTGATGAAAGCATCTTCCCTCTACGGTGGCAGCACTGTCCACCCACTGCAGCAGCAGTTCCTGGCTTTACAGTTCTACAGCAGCCCCTGGCAAGGAACCTGGCACCACCCTCCCATCCCTGGGGAACCACCCAAGAGCTGAGTTCTCCCTACTCCCTTCCAACACTCCTCCCCAACCCCTTCACCTGGAGGACCCAAAACAGCTCTATGTCTGGGGATGGCTCCACCTCCGAATGAGCTCCTGCCTCCCTGTGTCACTTCCCACCCTGCCCAAGAGATTGTCACCTCCTCCTTATTGAAGCATCCTCCTTTCCCCAGTGGTCCCAGGGCCCCTGCAGATAGAACATGAGTGGCTGGTCTTGAAAACATGGAGTTTTCACCCCAGGTTGGAGGCTGGAGGCCCCATGGGGGCAGGAGAGGTTTCTCACTGCGAATCCCAGGCTGAAGAATGTGGGCTTAGTTCCTCCAGCAAAGCTGCTCTTTTCCAGCCTAAGACTCAATACAGGAGGAGGAGAGGAGGATGCATCTGCTTTTCAGAGATCTCTGTCCATCTGAGGGGCATGGGGAGAGCAGCCAGAGGCAGCGGTCAGGAAGTGCTGTGGGCCAGAGCTGAAGGGGAGCTGTCACCCTTGAGGCATGAGCTCCCAAGGCCAGGGAGCACATCCGCTCCATCCCTGGGTTCCCAAGGCTGGCGCATGGCGGACATCAGTGCATGTTGGCAGAGCTGAACTGAGAAAGTGAAGGCCTCACCTAGCCTCACCTAGCCCCTTCTTGGCACAAGCCCTGGCTCAAGAAAAATGGCTCTTCCTAAGTACAAGGATCTGCTGGGGGATGTCTCCCCAGGTGACCACGTAGGCACGGGGGCCTCTGCCCCTCTCCAAGGGCACAGAGCACAGTGCTCTCCTTGGCCCATACAGAGAGGCATCCTGGAACACTTGCACACTCAGAAGGAATTCATGAGGCCTGGGTGGCGGCTCTGAGGAACAGCCTCTGCATAGGGAGCAAGAGAAGGAGGGCGGCATCTCAGGAAGTCGGGCTGCAAGTGCAGCACCCTCAGCACATCGCCCTGCCTGGGGAGACTGCTTTTCCTGAGTCAGATTCGGCCTGAGCTGCCAGCACAAAACTCTGTGTGTGGGGTTTTTGCTGGACGTTGCACTTTTGCATTCTAAGTGACTCCTTCTCTCTTTGTGTCTCCCAG
Seq C2 exon
GATCACACCTCGACACCCAACCCCTGAACCCCACACACTCTGCCATGCACACAGGAGGAGAGCTGGACCTGAGGGCCACCGCAGCGGTGCACACATTCCTCTGGGCTGACGGCATGACCTCTGTAAGGGACTCCTGCTAGTCCCCTCTTGGCATGAATGACTGACTGTAGACGCATGACCTCCAGGCTTCAATCCTGCCTCTTGCAATGACAGCTGATCTGTCGGAACCAGGACACAAAAGCAGCAAGAAGCGGGGAGAGAGAGGGATAGAAAACAAGCGCAGGAGAGCCTGCGAACGCAAAAGTGAATGAGGGCTTTTTGTGGCTGGGGATGGGTTTTGGTTTTGGGGTTTTTTTTTTAAATTGTTTTGACTTCGTACAGGGTACTTTTTCCCAACCTCATCTGTCAGAAATCCATGTGGGCTTCCTGGAAAGAAAAAAAAAAAAAAGAAAACTAGGCATGAAATCAGTTTAACACCTTAATCTTAAGCCATGTCCTCATCTGCCCACCCTCCCCAACCCACATACCTCCATTCCACTTGTGACACCCCCTCGACTCCCTGGTGACGCTCCTCCCAGATCGCTCTACATGACATTCAGGACACACACACACACACACACACACCACTCGCCTCCACTGAATCTACACACAGATTTTACTGTGACTTCTGAAGCTGTATAGACTCTGCTGTGGATAAATTGGAATTTTTTATGTTGTCTCTCTCTCTGCCAATTTCAATACGAATCATCTTCCAATGGAAAATCATTACCTTGAAGAGTGCATTCGGGGTTCCTTGTGTTAGGGACTTAAGAATCTGAGGCGAGGACCCCCAGGCTTACCTGTAGGACTCAAAGGGAGCCAGGACCCCATCTGAAAGGGTCTCCTCTCTCAGTTGGGGGACAGGCCGGTGGCTGACCCAGGATTGCACCAGCATGTCCATAGAGAAGAGGTTTTCTATGTCTTCAAGCACTATATCATAGTCCGTGTTCAAAGTGTAAACTGTACAGTAATCAGCCTTGTGTATATGAAAAACAATAAATACTATGCAAACCAATAGAAACATTTAGCAGTACGTACAGAGCCTGACAGCGCAGCTCCTGAGGACTTCTGCGGCTGCAGGAGAAGGAGCTGTGGCCTGTCTTTCAGTGAAAGAGGAAGGAAAGGAGTAGGGCTAGTGAATGTATCTGCCAGGTCTTAGAAGTCAGGACCACCCAGGGTCTCCCAGAGTGAACTTGGTGCTCTAAGTCCAGGCAGCCTGCAGGCTGGGGACCCTGGGTGCAGGTGCCAGGCTCGAGGCTGTTCCCTGTCCTGCCTCAGTGCCTCCCCTCTGCCCAGCCCCTGTGGCCTCTTGGAGAGGCGAGCCAGGGGGCTCCCCGGACCGCATGGCCGGTGAGAGTAGAGTCGGAGGCGGAGAGCCTGGACGCCCAGAGGCCGGGGCCAGGCTCTGGGTCAAGGCAGGAAGGAGACAGACAGCTGGCAGTTCCTCGCCTCGGTGCCATCAGGGAGGAGCCTTAAGTTCCACTAGAGCCTCCGGCCCAGGGAGGCCAGAATCAGCACAATCCCGGCCCCGCCCTCGCGGCGGGCGCCCCCAGGGCCAGGAGAGAGAGACAGGGCTGGCTCCTCTCGCCCCTGGAGCCGCGGTGTGGACGGCCCGGCCCCGTCCGCCCCGCCGCTCTGCGGGAGTGTCCTCGGGACACACTTAAACCTTCCAAGTAGCACAGAAGCCCCCTCCACGTCAGAGGCCCCCTGGCCGCGGGGCCTGTGAGCGGAGAGGGGCCCTGCTTCCCACACAAATCCGCCCCGGTGCACCCCCGGCCAGGCAGGCCCCGGGGCGGCCTAGGCGCCTTGTCGGCCGGGGGTGGGGCTGCTTTTGCTTCCTTTAGAGGGGCGGGCAGGGAGAGGAAGCTCTAGCTCCGGGCCTGAGTTTCCCCGAGGCTGCGTCGGAGGAGCTGCAGGGCGAGCCCGGACGGCTGCCGTCTCCGCCAGAGGCCACCCCGGCCCGGCCTCCAGGGCGCAGAGGCGCCCCCCTCCATCCTCCCCCATCCCGGGGGCCACGGCAGGGGGGCCGCACAGCGCGGCTGGGACCGATTCGGTGACGGCCCAAGGAAGCTGGGCTCAGGGCTCGCCTCTCCCGCCTCGATCCTGCACCTTCCTCTCCCAGGTCGCTGCTGCAGCCAACCCAGTAGCCCCCTTAGCGCCCCCGCGGACCCCGCAGCTCCAGACTCCGCTTTGGCACCTCTGCTCCGGCTGGCATGGCTGCACGCTCCGGCTGCTAGTAGGAGCCGTTAGGGGAGGAGTTTGGGGTCTCCACACGATGCCTAGAGAATGCTGCAGTCTGCACATTAGACGCTTTTTAGAAGTTTTGAAATTACCTTGATTTTTTTAATTGTTATGAAAATGGATCTTTTCTTGACTCTCCCACATGCTCTGTTATGGGAGAGAATCCCCTACCCTACTCTGATGTATAGACCATTCTCCCTTCACCAGCCGAACCAATGTCAAAATTAATAAAGAAATGGACTAATGGCACAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534:ENST00000347528:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development