MmuINT1004268 @ mm10
Intron Retention
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23141596-23150497:+
Coord C1 exon
chr8:23141596-23141720
Coord A exon
chr8:23141721-23148280
Coord C2 exon
chr8:23148281-23150497
Length
6560 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
CTTCTTTCTGTGCCCTGCAGGAT
3' ss Score
11.31
Exon sequences
Seq C1 exon
GTGGAGCTAAGAGGGAGTGGACTCCAGCCGGACCTGATAGAGGGCAGGAAGGGGGCTCAGATAGTGAAGCGGGCCAGCCTGAAAAGGGGCAAGCAGTGACCTCTCCTCAAGTAGCCCCTTGGGAG
Seq A exon
GTAACAGTGGCTTTCTCGTCCTTGCTGGCATGGTCCTTGATGAGGTAGCTGCTTGCTGCTCCCAACCCACCCCATCCTTGCACTACTAGCTCAGTTCAGAGTTAAAACCAGACTCTCAGAATCCCACTCCTCAAACTAGCCACTGTCTCTGCCCCTCCACGTCCTCTTCAGACCTGTGCCTCTCTGTTGACACCAGTCTGCTGGAGAGTACACAAAATCAGGGGCTTGGGTTTATTTTGCTTATTTATATTTTCTTTTGTCTTTTTTGGCTGTGTTAGGGGGGTGGGACCAGAGATAGGCATTCTGAGCCACACCTTCAGTCCCTGTGCAATTTAGTTATAAACAGAGTCTCTCTATATAGCCCTGGCTGTCCTGGAACTTGCTAAATAGACCAGGCTGGCCTTGAACCCACAGAGATCCAGCTGCCTCTGTACTGGAATTAAAGGCATGCAGCACCATGCCTGACTGTACCAGTATAATGTTAAAATAGTGCTTTGAAGTAGTGCTCAAAACACAGTCTGAGCCTATCTCACTACACATGGTCAGAAAGCACGCCAGACATAAACCTTAAGGCTCACTGGAGTCCTAACCTGCCATAGCTTTAATTCGATTACTGTTCTGAGAACAAGGCTGCTCGCTTGATGTCTGAGAAGGAACTAAGTTAGCAGACCCAAGGCATAGGTAGAATCTTCCCTGGAAGTGAGGAAGGTCTTCATGGCTAACGGCTGTACTAGTGTGTGAGGGGTGTGCGTCAGGGCGGGGGCCAAGGATGGGTGGGCCAGGCTACGCAACGAAGATCTTCAGCAGGCTGCAGTGCCCAAGAGCCAGCCTCAGCAGCCAGCTCTGATCTCGCCCTCCCTGAGGGGTCCTGTACTGAGCTGCCCCGAGGTCCTTCACTGTGCTCAGCTCGGGGCAGCTCAGTACAGGATGCGTCAGGGTGGGAGACAACGGGGAACAAGCCAGCATCACAGCCTCTGCCCATGCACAGCACTAACTGGGTTATTGCCCCTTCCCCCACCCACCCCCACCCCTGAACTCTCAGGGCCCAGCTCCAGAGCCGAGCAGCAGGCAGTCACTGGTTTTCTGCCTTCTGCAAAAAGCAGGGCCCGCGCAGCCTCCTGGGCCGGCAGAAGTGCTGACTTGATGCTTCCCAACATATCTCAGCACTTGGACAATATGAGGCTGGGCAGAGCCCGATAGGAGAGTAAAATTAGCCCTGACTCCTCAGCAGCTGTAAGGAGGTCACAGTGTTAACCCCAGCACTGCCAGGAGGGTCCTGCATGTCTGCTGATTTAAAGGCCAAGACTCGCTCTTGATCCCGGCTGGGAAACAACCCAAAGGTTCGAGTCATTTTTAAAGGAGGGAGGGAGGGAGAATGTCTTCTTCAGCCCTATCTTTCTTACAGTGGCAGCCGGACTTGCACTTGTGTTTGTTGGCTGAGACTTTATCCAGGGCCTCAATGGGAGGCAGCAACGGCAAGGCAGCTGAAGGACAGGGCAGAAGTAGAGTGTTTCATTAATTTACTGTACCCGGCATGCCCCTGCCCCAACACCCCCCCACACACACACACACTACACACATACACACACACACACACACAACACACTACATATACACACACTACACACACACAACACAACACACACACATACACATACTAAATACACAACACAACACACATACACACACACAGGCACAACACACTTACACACACACACACACACACACACCACACACACACTACATATACACACACTACACACACACAACACAACACACATACTAAATACATAACACAACACACATACACACACACATACACACACAGGCACAACACACTTACATACACACACACATACACTCTCTCACATACACACTACAGAGAGAGAGAAAGGGAGAAAGGGAAGGAGGGGGATATTTGCCACCAGACCTCATGAGTTTAGGAGTCAGGAATTCTGAGCAGCCTGGTTTGGACAGTACTTAGCCTCTGCCAACAAAAGACAGAGGGTGGGTGACTGGGGTAGTGACTGGGCAGAAGAGCGTGCAGTGGCAGGCTCCTGCCCAGGTCTGACCAGGTTGTGGAGCAGCAAGAGTGGCCCATCCTCAGTAAGAAGTTACCAAAGGGCTTCAGGCTCCGTCCCCACCACCACTGCCCCCAACCCCCGCCCCACAGGCAGTCCAGCCGATCCTTGTCATTCCTCTTCCGATTTGCCTACGCCCTAAACCTTTCTTGAAATCCAAAAATGAGCACCCAGTCCTTCCGTGCTCAGTCATTCCCAGACACACAGACAAAGGTGACCACAAAGTGATGGGCATGTGCCGTCCCCAGCTCCACCTTTTCCTGGGTCTCATGCTGCCCTTTATTTTTAATCTATTTAACGACACAGTGCATTTCCAAGTTCTTCATCGTTTGTTTCACTGTTTGTGTGGACGTTCTGTCTGTCCGGGGAAGATGAGTTCTAAGTCTTCCTGAGGCACTGTGTTGATGGCAATGGGGTGAGCACGAGTGAATGGCCTGCATACATGCGATGTGCCACCCTCAAAAAGAAATACACACGCAGCATGCTGATGGAGTCGCTGGCTGAGGAAAGCATGACCTTGCATGTCCCTTGGGAGCGGTGATTCAGTATTCGCTAATCCCACGCTCATACTTTATAGACCAGGACTACTGTGAATAATGAAAAGCATCTTATATGTTCCAAGTGTAAAAACTAGCCTTGGAGTCCAGATTCAAGACTTGGCTCCCCCATTCTGGTCCCAAATGGTATGACCTTAAGTCACTCAACTATCCCCAGCTTTGTACGCCTCAAGGAAAGATGGAGATAGTCTCTCCTGGATATGTGTTACTTATCAATTTAAAAAATGCGTGCAGAACAGGGTGTGGCCCAGCGGCAGAGTGCATGCTCAGCCTGCCTGAAACCCCAGGTTCCAGCCCCAGCGTGGGTGTGGCAGGGGAGTGGGGGCGCAAATAGAAACTATGAGAGGTGTCGTGTCGTGAGGAGTAAAGGTGTATACACTCTGGCGTCCCATCAGTGACAGGTGTTGTTTGTAGTGTGACTCAGGGCAAGTCAATTGACTTTCCTACGCCTCAGCGTTTCCACCCACGCGTCGCAATAATGCCAGCACGTTCCTTGTGGAACTGCTGTACGGTAGCAGATGCTCTTATTTTTGAGGAAGGGCTTTACAGAGTGCGAGGGTCGACAGTGCTCTTTCTCAGGGCGTAGTCCATATCCTGCTAAGAAGATACAGACCCCCGGGGCCGGGGCATAGAAGCTTGCAGGCCTGCGAGAGACTGAGCTGCTGTTCTCGGCTGCAGTTCTGCTCAGTTAAAACCCAGGATGTCAGTATCCGTCACTATGCCGTCCCTGGGATTAGATGCATGGTGAAAGTCGAGTTGTTATGCCGGATTTTGACCCTTCTCCTCAAACTCCTCTCACGTCGTCTGGCATAGTACAAGAATCATATCTAAAAGCAGGCTAAAGTGGAGGATGAGGAGCATTTGTTTAGAGGACTCTACACTCTGGTGAGCAAGGCATTGCTGAGCTTTGTTCTGATCCTGCCAGTCTCCCCTTGCACTGGAAAGTCCTAGAGTGAAGAAGCCAGAAAATTGCTGTTTTCTGTCTGAGAGGTCAAGGCTCATTGGCACTGGCGGGTCTTGTACTGTGCCTGAGTGTTAAGGTACCAGGACTGCTGGGAAAACTGGATGCAGCGAGCAGCTAAGGGCACTGGAGCATCGGCTATGGTGCAGCCCTGGGGGTACCAGGAGTCTGGCTGGGAAGGGTACTAGTTCTTGATACCCTCTGTGTGTGCATGGCTGTTCCCTCCAGGACTCTCCCAGGAGCTGAGGAAGGAGGAGCCCTGTGATTATATGCATGTTGAAAGTCTGTTTTCCTTTTAGAGAACACTTTCCACACAAACAGTGTGCTTCAGAGACTTCCATTAGTTCTGACGATAGACTGTTCTGAAAAATCTAGCGTTTCAGTGGGAGGAAGTAGGAAGGCATGTTTTGTTTCGCTTTGTTTTAAGCTAGAATCAGTTATCCTATGCAGCCACTTGAAGGAGGACATCAGAGTAGGAAGCGAAGGGTCACTGGTGAGAGCCACGGGCATAGATGTGGGGGCAGGTGCCCGAGCATGGGGAGAAAACGAGGATCCTGGCTGCGAAGGCGAAGGGGCTCTGAGCACTTTGGGGTGTCATCTCCTAAGCTTTGAGAGGACTGGCCTTTTTCAGAGAGTGGCTTAGGGAGGAGGCCCGGTGGCACTGATGGCATGGAGAAATCCTGGCTGTAGCCTGAAGGCTCGTGTTACTCCACCCCTGCGCCACCAGCTGCTCCAGCTGGACCTGTGTCTGTTCCACTTAGGTCTTAGCCTACCACTCACCTCTAAAAAGGGGGGGAGGGGGTGCTTACTCCGGAGTGATCTCTGAAGCTTGAGCCCTCTCAAGGACCTGGCCGTAAGCAGGTGGGAACTCAGCCTGTGTATCTAGAATCTCGGCTTTCATGTTGTCTCTCTGAGGAATGCTTAATTCTGGGGTAGGCACTGTAGGGAATTTGGAGAAGGGGCCCCCACCCTCCAGTGCTCATAATCCAGCCAGAGCAACTGCGAAGCTGGTTAGAAAAATAAATAAACAACAAGTTAGGTGCAGCACTTTCCAAGAGCCAGATACTCACAAGTTAAGTCCAGCATGCTCCCTGGATGCTCCCTGACCCCTCCGTCCTCCACGGACCCGTCTCAGCACATGCACACATCACAGTGATGGGTCCTACTGCGGCCCCATCTCACAAGCAGGGCAAACAGAGCTGAAGAGCAGCCGAGTACGTTTGACCAAAGCTAGGCAGCCAGTAAAGACAGAAGCAGGGTTCGAACCTGAACAGTCTAGCTTCAGAATTCCTGCTCTTGACCCCTCTGCCCCTTATGTGTCTCTTAGCCAATGGGTAGTCGTGGGAAAGGACAGCCTGAAGTGAAGGGCAAGTCTGAGGCAGGAACAGAAGTTGAGGAGAGAAGATGGCAGCGTTGGGGAGGGGGCATATGAGCACACAGCCTAGCAATAGGACTAGAGGAGAAGGTAGCCTAGGAAGGGCAGAATCTCATCTCTCAAATGGCAGCTCTCTTCTGCCCAGCAAGAATGCCTGACTTTTAATCTTCACAGCTGCAGGCAAAACATTTGGCATTGTCCCCCACATACCCCCGAGGGAACCATGGAGATGAGTCATGTTGGTTGTGCTCAATATACCCACGGCTCTGTCACCTGTAGAGCTTGGGACAGCTCTATGCCTGGGAACAGCTCTGCCTCAGAATGACTTCCAACCTTTACGCCTCTTCCCAGAGCACCGTCAACTCTCTTCATCTCAGTGGCCTTCCCAGCCAGGCATGGTAGATCACATCTGTCACCCCATCACTCAGGATGCTGAGACTGGAGGATTGCCATGAAGTCAGAGCCAATCTGTGATAGGCAATGAGTTCTGGGCCAGACTGGATTAAAGATGAGTCCCTGTCTCAAAAACAAAAAAACAAAACACACACACACACACACACACACACACACACACAAACCCAAAACACACAAAAATAAAGGAATGCCCTTTTCTTCTCCACCAGCTCCTAGGTGCCTATTGATAGAATCGTTGGTGTTTGCTGGATGATATGAAGTTATTTGTGTGTGATGGTACATACCTGAAATCCCAGCACCTGGGACGCAGAGTCAGGAGGTTGTAAGTTTCAGGCTAGCCTGAGCTGCATAACAAGACTCTGTCACAGAGAGAGGGAGAGAGAGACAGAGACACAGAGAGAGACAGAGGGACACAGAAAGAGACACAGAGACACAGACAGACAGACACAGAGAGATTTTTTAAGGAAAGAGGAAGGAGGCCGGCCTCACAGCAGTCTATAGGGGCTATAGGAGCAGAATGATGTCTTGCTGAGAATCCCGGGCTGTCAGGTTTGGCCTTCACATGCAAAGCTGCTGCTTCCCAGTTTAAGATGTACTATTCCAGAGAGGATGCACCTTCCTTCTCTTCATCACAGAATTAGCCCACCACTAGGCATGCAAAAACGGGAGCCAGGGATAGTTGACAGTAAGAGTCTATGGAATTCAAGGTCATGACTTCCTGAGACCAGCGATCTTGTCCAGGGTGGGCACAGAGCAGACATCTGTGCTGTAGGCCCACCTGAACTGAGAGCATCAGGGCATGTCTGCCTAGCCTCGCCTTTTTCCCAGCATAGGGTCTGTCACAGGAAAAAACAAAAGCCACTTTCTAAGCAGAAGATTCTTCTCTGAAGATCCCCTCCCCCTTCCAGCCTCCTGGCAACACAGTACCTTCCCTATCCCCTATGGAAGGCTGCTGAGAGCTCATCTTCTCTACATTAAACAGTGGAGGCGGGGCAGCTAGTGAGCTGAAACATCTGGGTAGACATCAAAGATGGGTGGGTGGTATTCTGGGCTAGCCTCTGCTACTGCAGTCTCAGCTTACTGCTTTGCTTGGGGACACTACTTCTCCTGGTGGCTTGCCCTGGACGGAAGCACAGAGCTCCCGAGTGACTCCTTCTTTCTGTGCCCTGCAG
Seq C2 exon
GATCACACCTCAACACCCAAACCCTGAACTCCACACACTCTGTCATGCACACGGGAAGAGACCTGGACCAGAGGGCTACTGAAGGGTCGCACGTGTTCTGAGCTCCCCGGCATGACCTCTGTAAGGAGTTTCCTTTAGTCTCCTATTCGCATGAATGACTGGCTGTAGACGCATGACCTACAGTCTTCAGTCCTGCCTCTAGCGACTATGGATCTCTGTGGGAATCAGGACAAAGGCCTCGAGAGAAGGGAGAGAAGAAGGGAGAGGATAGCAAGCCCCAAAGAGCACACGGGTGCAGACACGAATAATAAGGGCTTTACTGTGGCCGGGATGGTTGATCTGTTTGTTTGCTTTTTGTTTTGATTTTTTGACTTCAACCTCATTTGTAAGAAATACACATAATCTTTCTGGACCGAGGAAACCGGGAACGGCGTGAAATCAGTTTAGCCCATTGTCCTACATCCTCGTTGTACCTGCACACGCCACATGCCACTTGTAACACCCCACCCCACCCCACCCCACCCTACCCCCCAGCCCCCATGAAGGGACTGCTCTTCTCAGAATGACATGACACAGGTGCACATGCGCAGGCCTCCCCTTCACTCAGTCTACACTGGTTTTACTGTGACCTTTGACGACGCTGTATGGATAAACTGGATTTATTATTTTTTTTATGTTGTCTCTCAGTTTCAGTATTACTCATCTTCCAGTGGGAAATCATCACCTTGAGAGTGCATTCGGGGTTCCTTGTGTTAGAAATTTAAGATCTGAGGCAAGGACCCCCTAGGCTTTGCTGTAGGGCTCAGAGGGAGCCAGGGTCCCATCTCAAAGTTCTCGGCTGGGGAAGGGCCTGTGGCTGTCCGAGGATTGCACCAGCATGTTCAATAGAGGAAGAGGTTTTCTAAATCGTCACGTACTTCTATAATAGTCTGTGTTCAAAGTGTAAACTGTACAGTAATCAGCCTTGTGTATATGAAAACAATAAATACTATGCAAACCAATAGAAACACGTTAGCAGTATGTACAAAGCCCTAAAGAGCTCAGCTCCTGAGGACTTCTCCAGGCTGTGGGAGGAGCTAAAGGCTGTCTTTCACCGAAAGAGGAAGGGAGTAGGGCTGTGAATGTACCTGCCAGTTCCTAGGTCAGACCATCCTGAGGTCTTCCAGAGCCAACTTGGTGCTTGAAGTGCAGGTGGCCGCAGGCTGGAGGTCCTGGCACAGACAACTGGGCTCGGGCTGGTCGGCCAAGTGCCTGGCTCTGACCACGGGCCCAGCGCAAGGAGAGCCGGAGCAGGATGGAGCTGCTGACCAGGAGGCTGAGGAGAGACCCTCTTCTATCTAGACTCAGGGCCAGGCCAGGAAGGGGACCCTCAACTGGCTGGTCTTGCCTTGGAGCCCTCAGGGAAGAGCCTTAACGTCACACTAGAGTCTCCTGCAGAGGGAGGCCCGAATCAGCACAATCCGGCTCCGCCATGCCCGGGCGGCGCCCCCTAGGGCCAGGAGAGAGACTGGCAGGCTCTTCTCGCTCTCCCAGAGCCACTGGTGGACGGCGGTCACCTTCCTCGCCTGCCGCTCCTCGGGGTGTCGTCGGGACACAATAAAAACCTTCCAAGTAGCACAGACGCCCCTTCATGCCCGTACCCCCACGCCCTGGAGGCCCTCCCGGGGACTCCAGCCCGCGCGCGCTCTAGCCCCGGGCCAGTGCGCGGGTTGGGGGATGCTGTGGTCCACGGGCGCGGCTAGCTTTCCTGGGGGTAGGGAGGAGGGGCGGCGGCCCCGGGAGGGCGGGCGAGCACGGGCGCGGGGTCGCCCCGCCTCGCCCCGCACCCTCCGCCCAGTAGCGGCTCTTAGCGCCCTGCGCGGCCCGACTCCGCTTTGGCACCCTCCGCTCGGTCTGGCTTGGCTGCTTGGCACGCCGCCCCCCCGCCCTCGGCGGCATGGCTGCGCGCTCCCGTTGCTAGTAGGAGCTGTTTTAGGAGGAGTTTGGGGTCTCCACTTGATGCCTAGAGAATGCTGCAGTCTGCACCTTAGACGCTTTTTAGAAGTTTTGAAATGACCTTGATTTTTTTAATTGTTATGAAAAAAAATGAACTATGTCTTGGCTCTCTCACATGCTCTGTTACTGAGAGAGACCAGCCCACCCTACTCTGATGTATAGACCATTCTCCCTACACCAGCTAAACAAATGTCAAATTAATAAAGAAACGGACTCATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543:ENSMUST00000118733:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.666 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types